Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58040 336 / 4e-99 FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIPS5, ATFIP1[V], FIP1[V], A homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) AT3G66652 72 / 2e-12 fip1 motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040030 [exp] 1213 / 0 AT5G58040 389 / 5e-117 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Lus10016905 [exp] 71 / 6e-12 AT3G66652 90 / 6e-18 fip1 motif-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G110100 [exp] 649 / 0 AT5G58040 355 / 1e-102 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Potri.006G187400 [exp] 632 / 0 AT5G58040 355 / 1e-102 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Potri.010G145150 [exp] 101 / 2e-21 AT5G58040 107 / 4e-23 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05182 [flax] [poplar] Fip1 Fip1 motif
Representative CDS sequence Show only first row Show all	>Lus10019610 pacid=23142546 polypeptide=Lus10019610 locus=Lus10019610.g ID=Lus10019610.BGIv1.0 annot-version=v1.0 ATGGACGAAGACGACGAATTCGGAGATCTCTACACCGATGTCCTCCAGCCTTTCTCCAACTCCTCCTCAACTCTTCCTTCCTCTGATCCTCCGCCGCCGC CTCTGCCGCTGCTTCAGCTAGAGCAACAGCAGCAGCAGCAGCCGGCAAAACGGTCGCCTCCTCCACCTTCTCAATCAGTGTCAATCGATCGCAATAACGA TGACGGCGAGATTCTCTACGGCGCATCTGCCCACGATCAAACCCTAGCGAATTCCGCCTCCAATAATTTGATCTGCGATGGCAAGCTCTCGTTTGGAAAA TCCCGATTGGGAGGAAACAAGGGTTTGGAGTCGTCGGCGGCGGCGGCGCGTTCTGTTGATTTCCAATCAGGAGAGCCGGATAACGATATGAATTTCGACA TAGAGGAAGCCAACGGCGGTGATATGATTCCTGGACTAGGCGGCATCGATGCGGAGGATACAAATCGGAACGCAGCTGTGGATGTGGCGGCGGCGGCGGC CGGCGATGGTATGGAAGAGTGGGAGGAGGAAGACAGTGACAGTGAAGACGATTTGCAGATTGTGTTGAATGATACCAGTCATGGACCGATGGGGATGGAA AGAGGGACGATGATTGGAGAAGACGACGATGAAGATGGTGAGCCTTTGGTGATTGTGGCAGATGGGGACCCGAACCAACCAATGGAGGAGCCGGACTGGG GCGGCGGAGACGAATCGGCAGCAGCTGCTGGAGGAGAAGGGGAGAAGAAGGAAGGTGGAGAAGCTGGTGCTGGGAAAGGAAATGCTGTGGTGGCGGCCAA ATTGGGGTATCCTCCTAATCATGGATATCATCACCCCTTTCATTCCCAGTTTAAGTATGTTAGGCCAGGTGCAGCACCAATGCCAGGTGCTGCCACAGGT CCTCCGGGAGCACCAGGTCAGGTCCGACCTCCTATCAACTTAGTCTCTATGCCGGGTCGTGGCAGAGGTGATTGGCACCCAATGGGTACTAAGAATGGCC CTCCAATGCAAAAGGGTTTTCCAGGTTATGGAATGTCTGGACGGGGCAACAGTATGGGTGGGCGTGGCTTTGGTGGAGGACTGGAATTCACCCTTCCTTC TCACAAGACCATATTCGAGGTTGACATTGACAACTTTGAGGAAAAGCCTTGGAAATATCCTGGTGTTGATATCACAGACTTCTTCAACTTTGGTTTAAAT GAGGAAAGCTGGAAAGATTATTGCAGACAGCTTGAACAGCATCGACTAGAGACTACCATGCAAAGCAAAATCCGGGTTTATGAAAGTGGAAGGGCAGAGC AGGAATTTGATCCAGATTTGCCCCCAGAATTAGCAGCAGCAACTGGCGGCCATGATGTTTCTGCTGACAATTCGAGTATTGGCAAATCAGATTTTGGCCA AAGCGATTCGGCAAAAGGATCTGCTCGCGCCCGGCCTCCAATACCAACTGGTAGACCGATACCAGTGGAAACTGGTTTTGGTGACCGTGCACCTTCCATC GACACTAGGCCACCTCGATTTCGTGATCCGGGACCGGATGTAATCATAGAGATTCCCCTGCAGCGATCACCAGAAGATGATTCCACCACAGAAAATGATG TTGGTGACACGGAGAACGATGATCTTACAAACAGCGACATTAGAAGTAGTCGTGTGCCTGAAGATGAGGTCACACCACCGAAAGCTGAATACTATGACGG CCGCTTGAATACTTATCCCAACAAAAAGGACGGGAGAAAGGCCCCGTATGTTGATAAGGATCTTGATGGAGGTGGGCCTCCAGTCTCTCATCACAACTTA CCAAGTAGATATCGTTCCAGTTCAAGGGGCCAGGCTCCCTTAAAACCTGATGTAGATATAGGTGCTTCTGATGAGGAAAGGCGGAAATTAAGAACGAATG AGAGGTCTCCAAGTAGAAGTTTACAGGACGCAGAGGAAGAATCAGTTGAAAGCATGGATGGCAGACGCAGTCGCCATCATTTATCATCTCCCATCAAAGA CACGAATGATGCCATAGAATCAAGTGTTAATGACAAGGATAGTGTTGATGCCGGAGACTTTTTACCCGGTGAAGGAAGCAAAGATGGAACAAATGAAGAT GATAGTGCCCGAAATGACATTGTTAAAGATGGAGACGCTTACCGAACAAAAAAGAAACCAAAAGTGAGTTCCTCTTCTGATCTGCCACTCCGGGAAGTTG ACAACGGGGATGACTCAAAAGCTGCCAGAAGCAGTGAAAACAGTAAAGCAAGATCAGGTAGTAGTCGAGATTATCAGAAATGGCAGGACGGGGTTGAGGA GGAAGTTCAAGGTGGGCGATCTACCCGCTCTGGCAGTCTCAAGAGGCACCCTGATGACAGTGAACTTAATTCACGTAGAAAAGATGTTGATTTGAGGCAA GAGACAGAAAGAAGTCGCATGTTAAGTAAAGGCAGAGAAGGGTCTTATAATCGCAGAGACTTGGATTCTAAGCCGGCCCATCACTTGCAATTAAAAAGTG AGGGTTATGATCGGAGAAAGGATCATGATAATGCTGATGGATCTTGGCAACGGAGGGATGAAGACCCATATGGCAGGAAGACTAGAATTGAAGAGATGAA GAAGAGAGAAACTGGAGATGAAATGGGATCCAGGCATAGAAAGGTTCGAGAGAGTGAAAGGAATGATAAGGATGAACATGTGCATCCCAAGAAACAATTG GAAAATGGTAGCTACAGGGTTCATTATGAGAAGGATGGCAGCTCTAGGCACAGGTAA
AA sequence Show only first row Show all	>Lus10019610 pacid=23142546 polypeptide=Lus10019610 locus=Lus10019610.g ID=Lus10019610.BGIv1.0 annot-version=v1.0 MDEDDEFGDLYTDVLQPFSNSSSTLPSSDPPPPPLPLLQLEQQQQQQPAKRSPPPPSQSVSIDRNNDDGEILYGASAHDQTLANSASNNLICDGKLSFGK SRLGGNKGLESSAAAARSVDFQSGEPDNDMNFDIEEANGGDMIPGLGGIDAEDTNRNAAVDVAAAAAGDGMEEWEEEDSDSEDDLQIVLNDTSHGPMGME RGTMIGEDDDEDGEPLVIVADGDPNQPMEEPDWGGGDESAAAAGGEGEKKEGGEAGAGKGNAVVAAKLGYPPNHGYHHPFHSQFKYVRPGAAPMPGAATG PPGAPGQVRPPINLVSMPGRGRGDWHPMGTKNGPPMQKGFPGYGMSGRGNSMGGRGFGGGLEFTLPSHKTIFEVDIDNFEEKPWKYPGVDITDFFNFGLN EESWKDYCRQLEQHRLETTMQSKIRVYESGRAEQEFDPDLPPELAAATGGHDVSADNSSIGKSDFGQSDSAKGSARARPPIPTGRPIPVETGFGDRAPSI DTRPPRFRDPGPDVIIEIPLQRSPEDDSTTENDVGDTENDDLTNSDIRSSRVPEDEVTPPKAEYYDGRLNTYPNKKDGRKAPYVDKDLDGGGPPVSHHNL PSRYRSSSRGQAPLKPDVDIGASDEERRKLRTNERSPSRSLQDAEEESVESMDGRRSRHHLSSPIKDTNDAIESSVNDKDSVDAGDFLPGEGSKDGTNED DSARNDIVKDGDAYRTKKKPKVSSSSDLPLREVDNGDDSKAARSSENSKARSGSSRDYQKWQDGVEEEVQGGRSTRSGSLKRHPDDSELNSRRKDVDLRQ ETERSRMLSKGREGSYNRRDLDSKPAHHLQLKSEGYDRRKDHDNADGSWQRRDEDPYGRKTRIEEMKKRETGDEMGSRHRKVRESERNDKDEHVHPKKQL ENGSYRVHYEKDGSSRHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019610 [exp]	0	1
AT1G15680			F-box family protein (.1)		Lus10007302 [exp]	8.9	0.7865
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	17.3	0.7262
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	25.9	0.6683
AT3G25510			disease resistance protein (TI...		Lus10009005 [exp]	31.7	0.6600
AT1G36990			unknown protein		Lus10003744 [exp]	33.9	0.6782
AT4G30790			unknown protein		Lus10007700 [exp]	34.6	0.6750
AT5G44150			unknown protein		Lus10039868 [exp]	44.3	0.6327
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10018928 [exp]	58.0	0.6656
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034263 [exp]	64.7	0.6614
AT2G39100			RING/U-box superfamily protein...		Lus10034165 [exp]	65.5	0.6331

Compare expression of checked genes

Lus10019610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.