Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27080 665 / 0 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT3G20560 647 / 0 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 619 / 0 Thioredoxin protein with domain of unknown function (DUF1692) (.1) AT1G36050 77 / 4e-15 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G22290 71 / 4e-13 Endoplasmic reticulum vesicle transporter protein (.1) AT1G22200 71 / 5e-13 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G21750 56 / 3e-08 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT3G54960 56 / 3e-08 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT5G60640 56 / 4e-08 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G35620 56 / 5e-08 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040029 [exp] 900 / 0 AT4G27080 702 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10011157 [exp] 783 / 0 AT4G27080 718 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10043062 [exp] 744 / 0 AT4G27080 698 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10036449 [exp] 77 / 1e-14 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10021024 [exp] 75 / 3e-14 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10036158 [exp] 73 / 1e-13 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10027795 [exp] 67 / 5e-12 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10023828 [exp] 62 / 3e-10 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1) Lus10035503 [exp] 61 / 7e-10 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G419300 [exp] 716 / 0 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) Potri.011G135500 [exp] 716 / 0 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.006G023900 [exp] 76 / 8e-15 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.001G206100 [exp] 74 / 5e-14 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.005G168800 [exp] 73 / 7e-14 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.016G022800 [exp] 72 / 1e-13 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.002G094400 [exp] 72 / 2e-13 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 72 / 2e-13 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.008G040100 [exp] 66 / 2e-11 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.013G111400 [exp] 58 / 5e-09 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [flax] [poplar] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10019611 pacid=23142568 polypeptide=Lus10019611 locus=Lus10019611.g ID=Lus10019611.BGIv1.0 annot-version=v1.0 ATGGCGGGGCTTTCGTCAAGCAGGCTGAAATCTGTCGATTTCTACAGAAAAATACCAAGAGATCTGACGGAAGCATCATTGTCCGGTGCTGGCTTATCCA TTGTAGCGGCACTCTCCATGATGTTTTTGTTTGGAATGGAACTGAGTAATTATTTAGCAGTAAGCACATCTACATCTGTGATCATTGACAAGAGTACTGA TGGTGACTTTCTACGCATTGATTTTAATATCAGTTTTCCCGCCCTCTCATGTGAATTTGCAGCAGTTGACCTAAGCGATGTATTAGGAACTAGCAGGTTA AATTTAACAAAAACAGTCAGAAAATTCTCTATAGATCACAATCTACAGCCCACTGGCTCTGAGTTTCACTCAGGCTCTGTTATGCATCTCATTAAGCATG ATGCTGATGTTGGTGAAGATGAGGTTGATGGTTCTGTGACGCTCAATTCTCGTAATTTTGATGGCTTCTCCAATCAGTTTCCTATATTGGTTGTTAATTT CTATGCTCCTTGGTGCTACTGGAGCAATCTCTTGAAACCTTCTTGGGAAAAGGCAGCTAAAATTATTGCAGAAAGATATGATCCTGAAACTGATGGACGC ATCATCTTGGCTAAAGTGGATTGCACTGATGAAGGTGAATTATGTCGGAGGGAAGACCATGGACAGCATGAACATGAGTCCTACTATGGGGATCGTGATA CTGAAACCTTGGTGAAGACTATGGAAAATCTTGTTCAACCTATTCCAGCTATACACCACACACTAGACAATTCAACCCAAAGTATCAAACGACCCGCACC CTCAACTGGAGGATGTAGAATCGAGGGTTATGTGCGTGTTAAAAAGGTTCCTGGCAACCTTATCATTTCAGCTCGCTCAGGATCCCATTCATTTGACGCT TCTCAAATGAATATGTCGCACGTTATTTCCCATCTGTCATTTGGTATGAAGTTTTCAGCCAGGCAAATGGATGATGCAAAGAGATTGATGCCATATATTG GTCGAAGCCATGATAGGTTGAATGGGCGGATATTTATTAATGAACGTGATATAGGTGCTAATGTGACTATAGAGCATTATCTTCAAGTAGTTAAAACCGA GGTGGTAACCACAAGGAGATCTCGGGAGCACAAGATAATAGAAGAATATGAGTATACAGCTCACAGCAGCTTGGCGCAGAGTGTGGATATCCCTGTTGCA AAATTCCATTTTGAGCTCTCTCCGATGCAGGTTCTGATAACTGAAATGCCAAAGTCATTTTCACATTTCATCACCAATGTGTGCGCCATTATCGGTGGGA TTTTCACGGTTGGTGCTCTGTTCATGTTAGGGGGTTGCCTTTTATTGGATCGTGGTGGCCTTAGGCTGCCCTCCAGTTGTTTAGGTGGGAGTGGTAAGTC GTTTGATGTCAAGTTTGGATCTTTGATGATGGAGATCCGCGGGCGATCATGA
AA sequence Show only first row Show all	>Lus10019611 pacid=23142568 polypeptide=Lus10019611 locus=Lus10019611.g ID=Lus10019611.BGIv1.0 annot-version=v1.0 MAGLSSSRLKSVDFYRKIPRDLTEASLSGAGLSIVAALSMMFLFGMELSNYLAVSTSTSVIIDKSTDGDFLRIDFNISFPALSCEFAAVDLSDVLGTSRL NLTKTVRKFSIDHNLQPTGSEFHSGSVMHLIKHDADVGEDEVDGSVTLNSRNFDGFSNQFPILVVNFYAPWCYWSNLLKPSWEKAAKIIAERYDPETDGR IILAKVDCTDEGELCRREDHGQHEHESYYGDRDTETLVKTMENLVQPIPAIHHTLDNSTQSIKRPAPSTGGCRIEGYVRVKKVPGNLIISARSGSHSFDA SQMNMSHVISHLSFGMKFSARQMDDAKRLMPYIGRSHDRLNGRIFINERDIGANVTIEHYLQVVKTEVVTTRRSREHKIIEEYEYTAHSSLAQSVDIPVA KFHFELSPMQVLITEMPKSFSHFITNVCAIIGGIFTVGALFMLGGCLLLDRGGLRLPSSCLGGSGKSFDVKFGSLMMEIRGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10019611 [exp]	0	1
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	3.5	0.7541
AT2G26600			Glycosyl hydrolase superfamily...		Lus10038099 [exp]	7.9	0.7444
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10021310 [exp]	10.4	0.7201
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020603 [exp]	11.2	0.7296
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10036912 [exp]	17.9	0.6715
AT1G11755		LEW1	LEAF WILTING 1, Undecaprenyl p...		Lus10042338 [exp]	18.2	0.7386
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10000706 [exp]	20.0	0.7186
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10014256 [exp]	23.9	0.7077
AT2G36110			Polynucleotidyl transferase, r...		Lus10029479 [exp]	24.0	0.6988
AT4G17540			unknown protein		Lus10040155 [exp]	25.0	0.7418

Compare expression of checked genes

Lus10019611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.