Plant FIBer expression Database

Lus10019614 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15160 686 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040027
[exp]
899 / 0 AT3G15160 806 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G135800
[exp]
735 / 0 AT3G15160 683 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10019614 pacid=23142564 polypeptide=Lus10019614 locus=Lus10019614.g ID=Lus10019614.BGIv1.0 annot-version=v1.0
ATGGGAGATTGGGACAAGGAGTGGGATTTTTATCTCCGGTCCTTATCCAACAGCGCCAGAGATTCCAACTTGGCTAGCGACCCCGCCTCCGATCCTTCTC
TCCTCAATTTCGTGAGGAAGCTCTATCAGTTGTGTAAAGAAGAGAATTCAGAGGATTTGGTGGCTAGGGTATATCCGCACTTTAACAAGATCTTTCAGCG
TTCCGTGGCTTCTCTTTCTCAATCGAGCTCCTCTTATGGACTTCTCTTGCTGGCTATTATCCAGTTTTTCCTGGACTTCGGAGAGATTGTTCTACATGAT
GCTGATCCCAGTTTAAGAACATTTTTCCGTTCATGTTTGAGTCGTGAATTTGCAGATGTAACCGTTGCAGAAGCAACCCTTGAATTTCTGAATGTCAACA
AGAGAAAGCTTCTGGCCTCTTATCCTGCGTTACTACCTCAATTTTTTCCACTGTTGCTCAAGTTGATAGCCTGGAATGGAGAAAAGTTGCAGAAATCATT
CTTGAAGGTTTTTCCAGAATTAATATCGCCAGCTTCATTTCTTCCTCTATTTCCATCCTTGGTGGATCTTCCTGTTTTAGTAGTGGCATTGGAAAGGGTG
GAGAGAAGTTCAGGTTCCCTTATTGGGAGTAGTATTGCCTCAATCCAGAAGAGTAGTGCTCCTGAGATGTTACTTGCACTAATGGATGAAGCTTATACTG
GTTCAACCATAGGAGATGGCGGTGGAGACAGTGAATCAGAGGAAGGCAATGCGATTGATGCAGGCGATCCTTTGTTTCTAGAACTTTTGAAGGATGAGAA
TGATGGATTAGCTGAGCGTCATAGGACATCCCTCAGTATGGCTGCAGCTTTGCAAGCTGCGGTCAATGTTCCTCAATCTGATAGGCTAAAGCAATCGCTC
AAAATAGCACCTCGGCTTCTGGATGTGTACTGTGCTATAGCAATCCGCGATGTCAATGACTCTTTAAATTGTGCCCTAATTCCATTGCTTATGGCAAGAA
ATGATACACTATTCCCTGACAAATATTACAGCTATCAGGTTCGTAAAAGGCTTTTGGAGTATATGCTGGCTTCGTTTCAGCGATCTCCAGATTTTATAGC
TCTTTTGAAGAAACCAATTGTGAACCGACTTGGAGAAGCTTATGACAGCCCGGCAAAGACAGAACTAGCATTACAGTTGTGTTGGGCAATAGGGGAACAT
GGTGGTGGTGGCGCGTCTCACAAAGATGCTGCTCGCGAACTTTTTGAGAATTTAGAGCTACTTCTCTACGAAAACCTGTCGTCTAGCCGGCTTGGCTTGA
ATTCAGCAATTGGCGAGAACGTGAGAAAGTCATCACAGTCAAGGCTTCTGTGTTTTGTTATAACAGCTATAGCGAAGCTGGCCACATATCACCGCGAATT
GTTACCAAGAGCCCGTGTGGCTAGATCTCGCATATCAGATATAAGGGTTTGGAGGCGTGCACGAGATTACTTAGGTTTGATCGATGATCCAGCAATTTCG
TTGTCTGTTTTGGGGCCTTGTCGGCCTTCACAAGGACAGGTTCAAAAGCCAGGAACTGTGAACTGGAGTGATGGAGCAACCAAAATGATTGCACATATCC
CCTTCTACCTTCTCGGTGAACAACAAGGCTCCCCATTCCACGACTTCTCTTTCTCTGATATTTTCCCGACAAGATGA
AA sequence
>Lus10019614 pacid=23142564 polypeptide=Lus10019614 locus=Lus10019614.g ID=Lus10019614.BGIv1.0 annot-version=v1.0
MGDWDKEWDFYLRSLSNSARDSNLASDPASDPSLLNFVRKLYQLCKEENSEDLVARVYPHFNKIFQRSVASLSQSSSSYGLLLLAIIQFFLDFGEIVLHD
ADPSLRTFFRSCLSREFADVTVAEATLEFLNVNKRKLLASYPALLPQFFPLLLKLIAWNGEKLQKSFLKVFPELISPASFLPLFPSLVDLPVLVVALERV
ERSSGSLIGSSIASIQKSSAPEMLLALMDEAYTGSTIGDGGGDSESEEGNAIDAGDPLFLELLKDENDGLAERHRTSLSMAAALQAAVNVPQSDRLKQSL
KIAPRLLDVYCAIAIRDVNDSLNCALIPLLMARNDTLFPDKYYSYQVRKRLLEYMLASFQRSPDFIALLKKPIVNRLGEAYDSPAKTELALQLCWAIGEH
GGGGASHKDAARELFENLELLLYENLSSSRLGLNSAIGENVRKSSQSRLLCFVITAIAKLATYHRELLPRARVARSRISDIRVWRRARDYLGLIDDPAIS
LSVLGPCRPSQGQVQKPGTVNWSDGATKMIAHIPFYLLGEQQGSPFHDFSFSDIFPTR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15160 unknown protein Lus10019614
[exp]
0 1
AT2G01460 P-loop containing nucleoside t... Lus10025598
[exp]
8.4 0.8797
AT4G24160 alpha/beta-Hydrolases superfam... Lus10033927
[exp]
10.5 0.8178
AT5G43710 Glycosyl hydrolase family 47 p... Lus10021888
[exp]
14.3 0.8500
AT5G66810 unknown protein Lus10016766
[exp]
19.0 0.8599
AT3G51830 ATG5, SAC8 SAC domain-containing protein ... Lus10025267
[exp]
21.6 0.8444
AT2G32700 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_ho... Lus10032614
[exp]
23.2 0.8203
AT1G07650 Leucine-rich repeat transmembr... Lus10031374
[exp]
24.7 0.8225
AT3G09560 ATPAH1 PHOSPHATIDIC ACID PHOSPHOHYDRO... Lus10009064
[exp]
25.9 0.8345
AT5G58720 smr (Small MutS Related) domai... Lus10040668
[exp]
28.0 0.8232
AT1G17440 CKH1, TAF12b, E... TBP-ASSOCIATED FACTOR 12B, ENH... Lus10006528
[exp]
28.0 0.8371

Lus10019614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.