Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54840 324 / 1e-111 ATSGP1 Ras-related small GTP-binding family protein (.1.2) AT3G21700 270 / 1e-90 ATSGP2 Ras-related small GTP-binding family protein (.1.2.3) AT2G44610 75 / 4e-16 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT1G05810 76 / 8e-16 ARA, Ara-1, AtRab11D, AtRABA5e ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) AT4G39890 71 / 2e-14 AtRABH1c RAB GTPase homolog H1C (.1) AT5G45130 71 / 2e-14 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT5G65270 71 / 2e-14 AtRABA4a RAB GTPase homolog A4A (.1) AT4G19640 70 / 4e-14 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G47520 70 / 4e-14 AtRABA5a RAB GTPase homolog A5A (.1) AT2G22290 69 / 6e-14 ATRAB6, ATRAB-H1D, AtRABH1d ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, RAB GTPase homolog H1D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040044 [exp] 494 / 7e-179 AT5G54840 331 / 1e-114 Ras-related small GTP-binding family protein (.1.2) Lus10039670 [exp] 264 / 3e-88 AT3G21700 325 / 3e-112 Ras-related small GTP-binding family protein (.1.2.3) Lus10031559 [exp] 262 / 2e-87 AT3G21700 340 / 5e-118 Ras-related small GTP-binding family protein (.1.2.3) Lus10015119 [exp] 261 / 4e-87 AT3G21700 335 / 7e-116 Ras-related small GTP-binding family protein (.1.2.3) Lus10027172 [exp] 246 / 3e-81 AT3G21700 313 / 2e-107 Ras-related small GTP-binding family protein (.1.2.3) Lus10040423 [exp] 77 / 1e-16 AT5G03530 278 / 1e-95 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10043349 [exp] 75 / 5e-16 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10019501 [exp] 75 / 5e-16 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10000536 [exp] 73 / 4e-15 AT5G47520 369 / 3e-131 RAB GTPase homolog A5A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420700 [exp] 372 / 7e-131 AT5G54840 363 / 2e-127 Ras-related small GTP-binding family protein (.1.2) Potri.011G136300 [exp] 369 / 9e-130 AT5G54840 370 / 5e-130 Ras-related small GTP-binding family protein (.1.2) Potri.014G152100 [exp] 278 / 7e-94 AT3G21700 315 / 2e-108 Ras-related small GTP-binding family protein (.1.2.3) Potri.003G086700 [exp] 76 / 2e-16 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.002G135500 [exp] 75 / 7e-16 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.014G150300 [exp] 74 / 2e-15 AT2G31680 374 / 1e-133 RAB GTPase homolog A5D (.1) Potri.002G231800 [exp] 73 / 3e-15 AT2G31680 374 / 1e-133 RAB GTPase homolog A5D (.1) Potri.005G075300 [exp] 73 / 3e-15 AT5G10260 400 / 2e-144 RAB GTPase homolog H1E (.1) Potri.016G010300 [exp] 73 / 5e-15 AT5G47520 395 / 7e-142 RAB GTPase homolog A5A (.1) Potri.007G096000 [exp] 71 / 1e-14 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08477 [flax] [poplar] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Lus10019615 pacid=23142574 polypeptide=Lus10019615 locus=Lus10019615.g ID=Lus10019615.BGIv1.0 annot-version=v1.0 ATGATGTACCGCAAAACCACTCGTTTAGAAATCAAGTGGAGCATCCTGGAACGCGTCTCTGTTTTCCGGCACTTGTTCCACTTCATTTGGGACAGGATTC TCTCCTGTTCCATTGGCAAGCCCCCTACCAAGTATCGCCGCCTCACTACTTCCCCCTTTACTCCTTCTTCTTGTTTCTCTTCCCCTTCTCGGCTTGACGA GGACGACGACGAAGATCACGAGGGGATTCCTTTCCAGCTGCCGGCCAGCGGTGGTGGCGGAGACTTGAGCAACTCTTCAGACTCCAATTTGGTACCCCTC AAGATCACCCTCCTCGGTGATTCCCTTATTGGCAAAACAAGCTTTCTGATCAAGTACGTTGGGGATGAACAGGAGAAGAATAGCCTGGAAATGGGTGGAT TGAATTTAATGGACAAGACAATGTTTGTTCAAGATGCAAGGATATCATTCAGCATTTGGGATGTTGGAGGGGATAGCAGGGCGTTTGATCATGTCCCCAT TGCATGTAAAGACGCAGTTGCAGTTCTCTTCATGTTTGATCTCACCAGTAGATGCACACTCAATAGTGTTGCTGGGTGGTATGCTGAAGCCAGGAAATGG AACCAGACAGCTATTCCAATCCTGATAGGGACCAAATTTGACGATTTCGTTAGGCTACCTCCGAATGTACAGTGGACTATAGCGACCCAGGCAAGGGGAT ATGCAAGAGCAATGAAGGCGAGCCTATTCTTTTCAAGTGCGAAACACAACATAAATGTGAACAAGATCTTCAAGTTCGTCATAGCAAAGTTGTTTAACTT GCCTTGGTCGCCTCAGAGGAACCTTACCATTGGGGAGCCCATTATTGACTACTTCTAA
AA sequence Show only first row Show all	>Lus10019615 pacid=23142574 polypeptide=Lus10019615 locus=Lus10019615.g ID=Lus10019615.BGIv1.0 annot-version=v1.0 MMYRKTTRLEIKWSILERVSVFRHLFHFIWDRILSCSIGKPPTKYRRLTTSPFTPSSCFSSPSRLDEDDDEDHEGIPFQLPASGGGGDLSNSSDSNLVPL KITLLGDSLIGKTSFLIKYVGDEQEKNSLEMGGLNLMDKTMFVQDARISFSIWDVGGDSRAFDHVPIACKDAVAVLFMFDLTSRCTLNSVAGWYAEARKW NQTAIPILIGTKFDDFVRLPPNVQWTIATQARGYARAMKASLFFSSAKHNINVNKIFKFVIAKLFNLPWSPQRNLTIGEPIIDYF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10019615 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	2.0	0.9460
AT2G32210			unknown protein		Lus10003815 [exp]	3.5	0.9442
AT5G55060			unknown protein		Lus10040061 [exp]	4.7	0.9457
AT2G32190			unknown protein		Lus10039015 [exp]	6.9	0.9349
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	6.9	0.9279
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10040814 [exp]	8.5	0.9325
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10040044 [exp]	8.7	0.9419
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	11.0	0.9297
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10017318 [exp]	11.0	0.9118
AT5G49710			unknown protein		Lus10015965 [exp]	12.6	0.9428

Compare expression of checked genes

Lus10019615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.