Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27060 256 / 6e-79 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G50890 219 / 2e-65 ARM repeat superfamily protein (.1) AT2G07170 141 / 2e-37 ARM repeat superfamily protein (.1) AT1G59850 114 / 2e-28 ARM repeat superfamily protein (.1) AT1G27210 112 / 9e-28 ARM repeat superfamily protein (.1) AT5G62580 86 / 2e-18 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040047 [exp] 543 / 0 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 342 / 4e-111 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10011149 [exp] 338 / 8e-110 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10027590 [exp] 138 / 2e-36 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10010730 [exp] 81 / 7e-17 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10008545 [exp] 48 / 5e-06 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G136700 [exp] 316 / 3e-101 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.001G421200 [exp] 305 / 6e-97 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 140 / 2e-37 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.010G038900 [exp] 115 / 8e-29 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.008G192100 [exp] 104 / 4e-25 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019616 pacid=23142572 polypeptide=Lus10019616 locus=Lus10019616.g ID=Lus10019616.BGIv1.0 annot-version=v1.0 ATGAGCTCGCAGTCGCAGGTGGCCAAATCTGGCAGAAATGCGAAACAAGGCACCAACTCCAGATCATCATCCCCGTCCACCCATTTAGCGATGATGGAGC TAAAGCAACGTATCCTGACTTCCCTCTCAAAGCTCGGTGACAGGGACACCCATCAGATCGCTCTTGAGGACCTCCAGACAATCACCAATACTCTCTCCCC TGAAGCATTCCCAATGCTTCTCAATTCCATCTACAACACTCTCTCCGACGACTCCACTGCCAAGCCCTCTGTCAAGAAGGAGTCCCTTAACTTGCTTGCT TTCGTTTGTCAATCTCATCGCGAATTGACGCTCCCCCATCTCACAAAACTCATTACCCACATTGTTAAGAGGCTTAAGGATTCGGATTCTGGAGTTAGGG ATGCTTGCCGAGATGCTATCGGTGTTTTGTCCGGTCTGTATCTCAAGAATGCTGGTGAAGGTGTGAGCGGACATGTGGTTGGTTTGTTCGTGAAGCCGCT GTATGAAGCCATGGGGGAACAGAACAAACTTGTTCAGGCGGCTGCTTCGTCTTGTATGGCCAAAATGATTGACTGTGCAGCTTCTGTAGATAAAGATGGT GATTGCGGTGCTACTCCTTTTCAAAAGCTCTCTCCCAGGATTTGTAAATTGCTTAATGGACATAATTTCCAGGCCAAAGCAGCTTTGTTGGGTTTAGTGG CGAGTTTGTCCCAGGTTGCCCTCAAGCAGAAAGTCCTAATTTCTTTGTCTAAACTTGCTGATCATGACACCTACCAGATTGCAGTCGAAAACCTTGATTT TCTTGCTCAATCCCTGTCTCTCAATGATCTTCCAGTACTTCTCAATGCTCTGTATTCCAGTTCCTCTTAA
AA sequence Show only first row Show all	>Lus10019616 pacid=23142572 polypeptide=Lus10019616 locus=Lus10019616.g ID=Lus10019616.BGIv1.0 annot-version=v1.0 MSSQSQVAKSGRNAKQGTNSRSSSPSTHLAMMELKQRILTSLSKLGDRDTHQIALEDLQTITNTLSPEAFPMLLNSIYNTLSDDSTAKPSVKKESLNLLA FVCQSHRELTLPHLTKLITHIVKRLKDSDSGVRDACRDAIGVLSGLYLKNAGEGVSGHVVGLFVKPLYEAMGEQNKLVQAAASSCMAKMIDCAASVDKDG DCGATPFQKLSPRICKLLNGHNFQAKAALLGLVASLSQVALKQKVLISLSKLADHDTYQIAVENLDFLAQSLSLNDLPVLLNALYSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019616 [exp]	0	1
AT4G38120			ARM repeat superfamily protein...		Lus10033266 [exp]	3.7	0.9324
AT3G08960			ARM repeat superfamily protein...		Lus10004753 [exp]	7.3	0.9266
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10019026 [exp]	10.2	0.9207
AT1G50890			ARM repeat superfamily protein...		Lus10019617 [exp]	10.5	0.8693
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013101 [exp]	10.7	0.9207
AT3G14470			NB-ARC domain-containing disea...		Lus10002736 [exp]	11.0	0.9110
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10004570 [exp]	11.2	0.9114
AT4G24610			unknown protein		Lus10015962 [exp]	14.4	0.9049
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10032069 [exp]	16.2	0.8922
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019588 [exp]	16.6	0.9084

Compare expression of checked genes

Lus10019616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.