Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50890 99 / 1e-24 ARM repeat superfamily protein (.1) AT4G27060 84 / 2e-19 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT2G07170 41 / 0.0002 ARM repeat superfamily protein (.1) AT1G27210 40 / 0.0005 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040047 [exp] 165 / 1e-47 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10011149 [exp] 119 / 2e-31 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 117 / 7e-31 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10027590 [exp] 45 / 9e-06 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10008545 [exp] 45 / 1e-05 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421200 [exp] 97 / 1e-23 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 89 / 5e-21 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 42 / 8e-05 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 39 / 0.0008 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019617 pacid=23142526 polypeptide=Lus10019617 locus=Lus10019617.g ID=Lus10019617.BGIv1.0 annot-version=v1.0 ATGGTGGAGGGTGCTGCAAGCAACAACACTGTAGTAGCAGAATTTAAGAATCTGTTGCCTAGCATTAGTAAAATGCTGAGCAGTAAAAGTTGCCAAGGCT CCACTTTTAAGCACGGTCTCCATGCTCTCACAGGTTTTGATTGTGTGATTGTAAGATATACCTTTGGACATCAGGTGGGGGCGATTGCCCCACAAAGCTT GGAACCTTTGCTGCAGAACATTCATGGCTGTCTTACAAGTACGGATTGGGCAACACGCAAGGCTGGAGCTGATGCTTTAAGTGCTTTAGCAGTCCATTCT TGCAGTTTAGTTTCAGCTGAAGCTGCTGATTCCGCATTGACGGCACTTGAGGCTTGCCGTTTTGACAAGGTTATACCTTCCTCTAAGCTCTCCCTGATGG AGCACCCTGGTTGGGACTGCAAGGTCTTGGCTTGCGTCTTGGATGAATTTAAGGAAAGAACATTGCCATACCCCTACTCTAGGCAATGCTTGAAACCTTA A
AA sequence Show only first row Show all	>Lus10019617 pacid=23142526 polypeptide=Lus10019617 locus=Lus10019617.g ID=Lus10019617.BGIv1.0 annot-version=v1.0 MVEGAASNNTVVAEFKNLLPSISKMLSSKSCQGSTFKHGLHALTGFDCVIVRYTFGHQVGAIAPQSLEPLLQNIHGCLTSTDWATRKAGADALSALAVHS CSLVSAEAADSALTALEACRFDKVIPSSKLSLMEHPGWDCKVLACVLDEFKERTLPYPYSRQCLKP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50890			ARM repeat superfamily protein...		Lus10019617 [exp]	0	1
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019616 [exp]	10.5	0.8693
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039423 [exp]	16.7	0.8476
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039854 [exp]	20.9	0.8550
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019751 [exp]	22.8	0.8501
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	28.2	0.8447
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	35.9	0.8388
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10008949 [exp]	36.2	0.8393
AT2G42700			unknown protein		Lus10033604 [exp]	42.1	0.8252
AT3G61690			nucleotidyltransferases (.1)		Lus10004019 [exp]	42.7	0.8416
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10017680 [exp]	43.7	0.8343

Compare expression of checked genes

Lus10019617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.