Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27060 470 / 2e-156 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G50890 353 / 4e-112 ARM repeat superfamily protein (.1) AT2G07170 58 / 1e-08 ARM repeat superfamily protein (.1) AT1G27210 47 / 2e-05 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040047 [exp] 945 / 0 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10011149 [exp] 709 / 0 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 701 / 0 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10027590 [exp] 66 / 7e-11 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10008545 [exp] 54 / 4e-07 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1) Lus10010730 [exp] 46 / 8e-05 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10036675 [exp] 44 / 0.0002 AT1G27210 353 / 3e-115 ARM repeat superfamily protein (.1) Lus10033129 [exp] 43 / 0.001 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421200 [exp] 679 / 0 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 662 / 0 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 72 / 6e-13 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.008G192100 [exp] 45 / 0.0002 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1) Potri.012G074400 [exp] 44 / 0.0002 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 43 / 0.0007 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019618 pacid=23142531 polypeptide=Lus10019618 locus=Lus10019618.g ID=Lus10019618.BGIv1.0 annot-version=v1.0 ATGATTGTGCTACAAAATGCCTTCATTCATCAATATTCAGCTTATGTTCTGACTTATATAAAACCTGTTAGAGATAGCGTGAATGAGGCATTGCAACTGT GGAAGAAGATTGCATGGAAAGAGGATGATGGAGTTTCAGATCACCAGAAAGCTCCCTGTGCAGGAGGTGAAACTCGAGGGAAGGTTGAATTATCAGACAA GAATGTCAATGTTATGGATAGAAGTGTAAAGTCTTCTATGAGAGACCCAGTTGATGGGTCACCCCCAGCCATGGATTCAGCTTCAAAGATCAAAGCTGGA AACATATCAGACAAGGCAGTTGTAATTCTGAAGAAGAAACCACCTGTACTAACAGATAAAGAGCTTAACCCGGAATTCTTCCAGAATCTTGAAAAGGAAT CACGGGGAAGACCAGACCACTCTACAAACAACAAGTCTGATGACCTGCAATTCGATAAAAGATGTTGTATCAGTGATAGAGGAATCATGGGGAGGGACTC CAGAAGCAGAGCATTGGATGGACAGACTGATTCGTACAGTAGGGAAACAACTGGAAATCATGTAACTCCCGCCAAAACTGATGGACAACCAGAAGGATCC TTGGGAAATAGTAGAGGAAATTGGTTGGCCATCCAGAGGCAGTTACTGCAACTAGAAAGACAACAGACTCATCTAATGCACATGCTTGAGGACTTTATGG GCGGATCTCATGATAACATCATGACCTTGGAAAACAGAGTTCGAGGTCTTGAGAGAGTTGTGGAAGACATGGCTCGGGATCTGTCCATGTCCTCTGCGAG GAGAGATGGTAGTTTTTCCATGGGTTTTGAAGGTTCAACTTCCAATAGATCACTAGGCAAGTACAATGGTTTCTCGGATTATTCCAGTAGTTGTTGGGGG CATTTTGGAGATAGATATGAGCAATACGAAGTTACTGCTTCAGCTGCAAGGGGGAAAAATCCTCAGTGGAGAGCGAACACATCAGAAAATTGGGATTTCA CATCGTATGGATCTTCAAAAAATGGTCAGGTAGGATCAAGAAGAGCTGCAGGTGGTGGTGTAGGGTCACCTAAATCTGAGCATGAAAATGATAAAGGAAG CAGCAGAAGGGGTTGGGATAAAGGTGGTGGCCTCTCTAGGTTTGGTGAGGGGCCTTCTGCTAGAAGTGTTTGGCAAGCATCCAAAGATGAAGCCACCTTG GAAGCCATCCGGGTTGCAGGGGAAGACAGTGGGTTAGTAAGGACTGCCAGGGTGGCCATCCCTGAGTTGACTGCAGAAGCAATGGGAGACGATAATGGTG AGCTAGAGCGGGATCCGATTTGGACTTCGTGGAGCATTGCAATGGATGCCCTAAAAGTTGGTGATATGGATACAGTTTATGCTGAAGTGTGTTCCACTGG AGATGAGCAATTGCTTGTAAAGATCATGGAGAGGACAGGCCCAGTAATTGACGAACTAACAAATGAAACAGCATGTGAAGTATTGCATGCAATTTCTCAG TTCTTGCCGGATCACAACATGTTTGATCTATGTTTCTCTTGGATTCATCAGTTGGTAGAGATAGTGATGGAGGATGGGGGTGAAGTAATGGGGATCCCCA TGGAAATGAAGAGGGTGCTGTTGTTGAACCTAAATGAAGCATCAACAGCAATGGAGCAGCCAGTGGAATGGGAAGGAGTGTCTCCCGACCAACTATTGTT GCAGCTGGCATCAGCTTGGGGGATTGAATTACAACAATTTGATAAGTAA
AA sequence Show only first row Show all	>Lus10019618 pacid=23142531 polypeptide=Lus10019618 locus=Lus10019618.g ID=Lus10019618.BGIv1.0 annot-version=v1.0 MIVLQNAFIHQYSAYVLTYIKPVRDSVNEALQLWKKIAWKEDDGVSDHQKAPCAGGETRGKVELSDKNVNVMDRSVKSSMRDPVDGSPPAMDSASKIKAG NISDKAVVILKKKPPVLTDKELNPEFFQNLEKESRGRPDHSTNNKSDDLQFDKRCCISDRGIMGRDSRSRALDGQTDSYSRETTGNHVTPAKTDGQPEGS LGNSRGNWLAIQRQLLQLERQQTHLMHMLEDFMGGSHDNIMTLENRVRGLERVVEDMARDLSMSSARRDGSFSMGFEGSTSNRSLGKYNGFSDYSSSCWG HFGDRYEQYEVTASAARGKNPQWRANTSENWDFTSYGSSKNGQVGSRRAAGGGVGSPKSEHENDKGSSRRGWDKGGGLSRFGEGPSARSVWQASKDEATL EAIRVAGEDSGLVRTARVAIPELTAEAMGDDNGELERDPIWTSWSIAMDALKVGDMDTVYAEVCSTGDEQLLVKIMERTGPVIDELTNETACEVLHAISQ FLPDHNMFDLCFSWIHQLVEIVMEDGGEVMGIPMEMKRVLLLNLNEASTAMEQPVEWEGVSPDQLLLQLASAWGIELQQFDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019618 [exp]	0	1
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Lus10009576 [exp]	5.7	0.7325
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10035713 [exp]	11.1	0.7298
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	11.6	0.7254
AT5G03500			Mediator complex, subunit Med7...		Lus10029326 [exp]	27.7	0.7000
AT1G73440			calmodulin-related (.1)		Lus10015884 [exp]	29.1	0.6308
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	32.0	0.6584
AT1G62330			O-fucosyltransferase family pr...		Lus10015558 [exp]	38.0	0.6440
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10041840 [exp]	46.2	0.6793
AT1G04900			Protein of unknown function (D...		Lus10016677 [exp]	46.6	0.6361
AT5G05230			RING/U-box superfamily protein...		Lus10029029 [exp]	47.3	0.6339

Compare expression of checked genes

Lus10019618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.