Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20540 1173 / 0 PolIB, POLGAMMA1 polymerase I B, polymerase gamma 1 (.1.2) AT1G50840 1158 / 0 PolIA, POLGAMMA2 polymerase I A, polymerase gamma 2 (.1) AT4G32700 90 / 8e-18 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040048 [exp] 1321 / 0 AT3G20540 999 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Lus10040049 [exp] 516 / 3e-172 AT3G20540 163 / 3e-43 polymerase I B, polymerase gamma 1 (.1.2) Lus10022115 [exp] 81 / 7e-15 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10007673 [exp] 55 / 4e-07 AT4G32700 313 / 6e-94 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421300 [exp] 1222 / 0 AT3G20540 1110 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Potri.011G136900 [exp] 1206 / 0 AT1G50840 1109 / 0.0 polymerase I A, polymerase gamma 2 (.1) Potri.018G036600 [exp] 82 / 2e-15 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease CL0219 [flax] [poplar] PF00476 [flax] [poplar] DNA_pol_A DNA polymerase family A
Representative CDS sequence Show only first row Show all	>Lus10019619 pacid=23142570 polypeptide=Lus10019619 locus=Lus10019619.g ID=Lus10019619.BGIv1.0 annot-version=v1.0 ATGGGGATTTCTTCCACCGCCCACATTTATCCTTTCAGACCTCTCCCTGTTTCTCCTTCTTATCTCAGGTTTTACCGCTCTTGCCCTTGCCTCTCTGCCG CTTCATCTCCTCCTCCAGCTAATCGCGTTGCTGCTGCTGCTTATACAATCCCTTTCTCCCGCCACAGATTCTGGGGACAGCTTCCTTCCGGTGTAGTTCT TAATCTTCGAAGAAGAGATGAGAAGCGGTATTTGGGCTCAGGAACTTATACCACTTCTACATATCTGGACACTACAACCACCTACAAAGAGTCGAGAATG CAGTGGACCAAAGAGAGTAACTATGTACGTGAACGTAGAAGTCGAGTTGCTCAGGATAACAGTGGCCATTTGCAAGATGGCCCCTCTTACTCGATGAATC ATGCTGAATATCTCAAAATGAGAGCTGAGGCTAAAATGGAAAGTAGAAACAGTGAGAATCGAGCCATGATTAGTCCAGGTTTAACTAATGGAAGATCAAA GGACTTTTCTTTGCTGGACCCTGAAGAGAGAGTAACAGCTACTTCATCCTTCACCGGTCAACAAAACTCTAGTTTTGGAAATGTTGGAGTTGGTTTTCCT TGTGGTAGGGAATATGATTTACCAATGATGCTTGAAACTGAAGTGCAATGTAATGGCAGTACAAATGGAGCGCCAGTGGCTGCTGATGGTTCAGCAATAA CAAACAGAAGGAATAATGGTTTTTCTTCATTGATTGTGGAAGAGAGGGCAAGAACGAATGGCTCAAGCAAGGTGGGTATGAATGGTTCAGCAATTGCTCA CAAAAAACCAAGTGGTTTCTCTTCTGAGGCTGCCAGCAAGAGTTTCAAACCATTGGCACCAGATGTGAATGGTACTGCAACCAGAAGGCCAGATAGTTCC TCCTCAAAATCTGTAAAAGAGATGGCAAAAACTAATGGGTCATTGGCAAGTGAAGTGGTACGGCACTCAGAAGGTTCACATTTTAGTAAAAGCAAGGGAA AAGGTGCTAATTACATGCCAAACGGAAAAATTGCTGCTGCTGCAAAGGCTGCAGATGCTGCAAATACTAAGGAATGCCAAACTGATATCCGCAACAGACT TACTAGTATCTCCAACAATGTTCTTGTTGTAGACAATGTATCCACTGCAAAAGCAGTTGTCAGTAAGCTTACTCATCAGTACAAGCACCTTGTCCATGCA TGTGATACTGAGGTTTCCAATATTGATGTGAAGGTACAGACACCAATTGATCATGGTGAACTAATATGTTTCAGTATATATTCTGGCCCCGAGGCTGATT ATGGAAATGGTAAATCATGTATCTGGGTGGATGTACTTGACGGAGGTGGACAAGATATCTTGGCTGAATTCAATAAGTTTTTTGAAGATGAGTCCATTAA GAAGGTTTGGCACAACTATAGTTTCGACAATCATATAATTGAGAACCATAAAATTCGTGTTTGCGGGTTTCATGCTGACACGATGCATATGGCTCGGTTG TTCAACTCAGCAAGACGTACAGAAGGCGGATATTCTCTTGAATCTCTGACGGGCGATGAAAGGGTGATGTCTGGTGCTAAATCATGCTACAAAGAGTTGA TTGGCAAAGTGTCAATGAAAACTATTTTTGGCAAGAAAAAGTTGAAAAAAGATGGATCTGAAGGAAAAACTACCATAATTGCTTCTGTTGAAGAGCTTCA AAGAGAAGATCGGGAGTGCTGGATTTGTTATTCTGCCTTAGATGCAATAAGCACCTTGCAGCTTTACGAGAGCTTGAAAAAGCAACTCATGCAAAGGGAG TGGAAATGCTACGGGAGACCATTTTCTAATAGGACGTCGATGTTTGACTTCTATCAGGAATATTGGCGTCCATTTGGTGAGCTTTTAGTTAAAATGGAAG ATGAAGGTATGTTGGTTGATCGGGCATATCTTGCAGAGATAGAGAAAGTTGCAAAAGCAGAGCAAGAGATTGCTGGTAAGAGATTCAGACATTGGGCATC TAAGTATTGTCCAGATGCCCAATTTATGAACATCGGAAGTGACACACAATTGCGCCAACTATTCTTTGGTGGTATTGCAAACAGGAAAGACTGTTCCGTT ACTCTCCCAGAAACAAGACTGTTCCCAGTTCCAAATGTCGACAAGGTGATTGCAGAAGGAAAAAAGACAGCTACTAAATATCGTAATATTAAGCTGCATA AAATTGTAGCCAATGATCTCCCAACTGAGTTGTTCACAGCCAGTGGTTGGCCATCTCTGAGTGGCGATGCATTGAAGGCCATGGCTGGGAAGGTTTCTGC AGACAGCTATTTCATGGATGATTTTGTTGATCCACATATGGATGAAGATGATAATGGTAATCCAGACTTGACAGAAGATTCCAAGATAGTATCAACTTCC GCCATGGATGTTGACACGTCTGCCTACGGTACAGCCTTAAGTGCATTTTCAACGCGTGAAGAAGGAATTGACGCTTGCCATGCCATTGCTTCTTTGTGTG AAGTTTGCTCCATAGATTCTTTGATATCCAACTTTATTCTCCCTTTGCAGGAGAGTAATATATCAGGCAAGAATGGGCGTGTTCATTGTTCTCTGAATAT CAATACAGAAACTGGGAGACTGTCTGCAAGAAGGCCAAATTTACAAAATCAGCCAGCTTTGGAAAAGGATCGCTACAAGATCCGTCAAGCATTTATAGCT ACCCCTGGGAGCTCCCTTATCGTTGCTGATTATGGACAGTTGGAACTTAGAATTCTTGCACACCTTGCTGGCTGTGAAAGTATGTTAAGAGCTTTTGAAG CTGGTGGCGATTTCCATTCAAGAACAGCAATGAATATGTATCCTCATATCCACGAGGCCATTGAGAGGAAGGAAGTGCTTCTGGAGTGGTATTCCCAACC CGGTGAAGAGAAACCACCGGTTCCGCTATTGAAGGACCGTTTTGCTTCAGAAAGAAGGAAAGCTAAGATGCTCAACTTTTCTATCGCTTATGGAAAAACT CCAGTGGGACTTGCACGGGATTGGAAGGTTTCTGTGGAGGAAGCTAAGGACACTGTTAATCTGTGGTACAAAGAGAGGCAAGAAGTGCTGAAATGGCAAG AAGCTCGTAAGAAAGAAGCTAATCAAACAGGATGTGTTCACACGCTGCTAGGACGGGCTCGCCACTTCCCATCAATGAAACATATGAGTCGTGCTCAAAG AAATCATATTGAAAGGGCTGCTATAAACACACCCGTCCAGGGTAGTGCTGCGGATGTTGCTATGTGTGCTATGTTAGAGATATCAAGAAATGAACGTTTA AAAGAACTAGGATGGAGACTGCTTTTACAGGTTCATGATGAAGTGATATTAGAAGGACCGAGTGACTCTGCTGAAGATGCAAAAGCAATAGTTGTTGAGT GCATGTCAAAACCATTTGGCGGGAAGAACGTTCTAAAGGTTGACCTCTCCGTTGACGCCAAGTGTGCTCAAAACTGGTACGCAGCAAAGTAA
AA sequence Show only first row Show all	>Lus10019619 pacid=23142570 polypeptide=Lus10019619 locus=Lus10019619.g ID=Lus10019619.BGIv1.0 annot-version=v1.0 MGISSTAHIYPFRPLPVSPSYLRFYRSCPCLSAASSPPPANRVAAAAYTIPFSRHRFWGQLPSGVVLNLRRRDEKRYLGSGTYTTSTYLDTTTTYKESRM QWTKESNYVRERRSRVAQDNSGHLQDGPSYSMNHAEYLKMRAEAKMESRNSENRAMISPGLTNGRSKDFSLLDPEERVTATSSFTGQQNSSFGNVGVGFP CGREYDLPMMLETEVQCNGSTNGAPVAADGSAITNRRNNGFSSLIVEERARTNGSSKVGMNGSAIAHKKPSGFSSEAASKSFKPLAPDVNGTATRRPDSS SSKSVKEMAKTNGSLASEVVRHSEGSHFSKSKGKGANYMPNGKIAAAAKAADAANTKECQTDIRNRLTSISNNVLVVDNVSTAKAVVSKLTHQYKHLVHA CDTEVSNIDVKVQTPIDHGELICFSIYSGPEADYGNGKSCIWVDVLDGGGQDILAEFNKFFEDESIKKVWHNYSFDNHIIENHKIRVCGFHADTMHMARL FNSARRTEGGYSLESLTGDERVMSGAKSCYKELIGKVSMKTIFGKKKLKKDGSEGKTTIIASVEELQREDRECWICYSALDAISTLQLYESLKKQLMQRE WKCYGRPFSNRTSMFDFYQEYWRPFGELLVKMEDEGMLVDRAYLAEIEKVAKAEQEIAGKRFRHWASKYCPDAQFMNIGSDTQLRQLFFGGIANRKDCSV TLPETRLFPVPNVDKVIAEGKKTATKYRNIKLHKIVANDLPTELFTASGWPSLSGDALKAMAGKVSADSYFMDDFVDPHMDEDDNGNPDLTEDSKIVSTS AMDVDTSAYGTALSAFSTREEGIDACHAIASLCEVCSIDSLISNFILPLQESNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA TPGSSLIVADYGQLELRILAHLAGCESMLRAFEAGGDFHSRTAMNMYPHIHEAIERKEVLLEWYSQPGEEKPPVPLLKDRFASERRKAKMLNFSIAYGKT PVGLARDWKVSVEEAKDTVNLWYKERQEVLKWQEARKKEANQTGCVHTLLGRARHFPSMKHMSRAQRNHIERAAINTPVQGSAADVAMCAMLEISRNERL KELGWRLLLQVHDEVILEGPSDSAEDAKAIVVECMSKPFGGKNVLKVDLSVDAKCAQNWYAAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	0	1
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	1.4	0.9727
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	1.4	0.9594
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040049 [exp]	1.7	0.9568
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040048 [exp]	2.2	0.9495
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010771 [exp]	2.8	0.9354
AT4G23940			FtsH extracellular protease fa...		Lus10023066 [exp]	5.3	0.9544
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10020879 [exp]	6.2	0.9220
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10022181 [exp]	6.6	0.9201
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	7.5	0.9151
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	7.7	0.9402

Compare expression of checked genes

Lus10019619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.