Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20530 508 / 0 Protein kinase superfamily protein (.1) AT1G61860 444 / 4e-156 Protein kinase superfamily protein (.1) AT5G18610 437 / 2e-151 Protein kinase superfamily protein (.1.2) AT3G07070 429 / 1e-149 Protein kinase superfamily protein (.1) AT5G13160 427 / 2e-148 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G24790 422 / 2e-147 Protein kinase superfamily protein (.1) AT5G02800 421 / 5e-147 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT4G13190 413 / 7e-144 Protein kinase superfamily protein (.1) AT1G07870 400 / 3e-138 Protein kinase superfamily protein (.1.2) AT2G28590 391 / 1e-134 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040050 [exp] 644 / 0 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10011148 [exp] 549 / 0 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 547 / 0 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10015756 [exp] 443 / 2e-154 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10033966 [exp] 444 / 4e-154 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 444 / 5e-154 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 434 / 7e-152 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011866 [exp] 434 / 1e-151 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1) Lus10041426 [exp] 433 / 2e-151 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421400 [exp] 523 / 0 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 500 / 4e-178 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.004G018500 [exp] 449 / 3e-158 AT3G20530 473 / 2e-167 Protein kinase superfamily protein (.1) Potri.011G000500 [exp] 446 / 1e-156 AT3G20530 481 / 2e-170 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 445 / 3e-155 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 446 / 6e-155 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 445 / 1e-154 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 443 / 2e-154 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 431 / 8e-151 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 429 / 4e-150 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019621 pacid=23142563 polypeptide=Lus10019621 locus=Lus10019621.g ID=Lus10019621.BGIv1.0 annot-version=v1.0 ATGGGTTATTGTTCCTGCTGGCATGCATTGTTGCTTGGCGTAACAGAAGCCGGTCCTGCAGGAAAAATCAAAGGATTATGCTGCCATTGTCTCATGCAGG TTCCTAGAGATAGCAGCAGGAGAAGGTACATGACAGAAGAAATCAAGAAAATTGGAAACAAAAACATATCTGCAAAGATATTCTCATTCCGGGAATTGAC AGTAGCAACTCAGAACTTCACATATGAAAAGATGATAGGGGAAGGTGGCTTTGGGAGGGTGTACAAGGGTCAAATTGAAGATCAGGATGTAGCAGTAAAG CAACTAGACAGAAATGGGTTTCAAGGGAACAGAGAATTCCTGGTGGAAGTTCTGATGTTGAGCCTTCTTCACCACTCCAACCTGGTGAATTTAGTTGGAT ATTGTGCTGATGGTGACCAAAGAATTCTTGTTTATGAGTATATGCCCAATGGCTCTCTGGAAGATCACCTGCTTGATTTGCCAGAGGAAAAAGCTCCTTT GGATTGGAGAAGCAGGATGAAAGTGGCAGCTGGTGCAGCAAGAGGACTGGAGTACCTGCATGAGACAGCAGATCCACCAGTGATATACCGTGACTTCAAA GCATCAAACATACTATTAGATGCTGATTTCAACGCCAAGCTATCTGATTTCGGGCTGGCCAAGCTCGGTCCAACAGGAGACAAGACTCATGTCTCCACCA GGGTGATGGGGACTTATGGATATTGCGCCCCTGAGTATGCTTTGACAGGACAGCTCACATCTAAATCTGATGTATATAGCTTTGGAGTTGTCTTCTTAGA GATCATCACCGGAAGGAGAGTCATTGACAATTCAAGACCAACTGAAGAGCAGAATCTGGTCAATTGGGCAACACCATTACTTAAAGACAGGAACAAGTTT GATTTACTGGCAGACCCATTATTGGGAGGAAAAGGAAATTACCCTCAGAAGGGTCTTCATCAAGCATTAGCAGTAGTAGCAATGTGTCTCCAGGAGGAAG CTGCAACAAGGCCATTGATGAGTGATGTAGTGACGGCTCTCGAGTATCTAGCAATGAAAAAAGACACCGCTCAAGGAGCTATAGACATTGGATCTGAGGG ACGCAACGATGAAGAAGAAGAAGAAGATCAGATTCAAGTTGATAGCTAG
AA sequence Show only first row Show all	>Lus10019621 pacid=23142563 polypeptide=Lus10019621 locus=Lus10019621.g ID=Lus10019621.BGIv1.0 annot-version=v1.0 MGYCSCWHALLLGVTEAGPAGKIKGLCCHCLMQVPRDSSRRRYMTEEIKKIGNKNISAKIFSFRELTVATQNFTYEKMIGEGGFGRVYKGQIEDQDVAVK QLDRNGFQGNREFLVEVLMLSLLHHSNLVNLVGYCADGDQRILVYEYMPNGSLEDHLLDLPEEKAPLDWRSRMKVAAGAARGLEYLHETADPPVIYRDFK ASNILLDADFNAKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYALTGQLTSKSDVYSFGVVFLEIITGRRVIDNSRPTEEQNLVNWATPLLKDRNKF DLLADPLLGGKGNYPQKGLHQALAVVAMCLQEEAATRPLMSDVVTALEYLAMKKDTAQGAIDIGSEGRNDEEEEEDQIQVDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20530			Protein kinase superfamily pro...		Lus10019621 [exp]	0	1
AT4G32030			unknown protein		Lus10001935 [exp]	7.9	0.8109
AT3G44670			Disease resistance protein (TI...		Lus10015465 [exp]	8.5	0.7997
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	9.4	0.8061
AT1G75860			unknown protein		Lus10034539 [exp]	13.1	0.8103
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10003972 [exp]	13.7	0.8093
AT4G12010			Disease resistance protein (TI...		Lus10042753 [exp]	14.0	0.7949
AT2G45910			U-box domain-containing protei...		Lus10014771 [exp]	14.3	0.8054
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	15.2	0.7848
AT1G05170			Galactosyltransferase family p...		Lus10002079 [exp]	16.7	0.7912
AT4G34950			Major facilitator superfamily ...		Lus10010805 [exp]	17.9	0.7539

Compare expression of checked genes

Lus10019621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.