Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54890 318 / 4e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G31010 228 / 3e-73 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT2G20020 207 / 2e-62 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT1G23400 194 / 8e-59 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 54 / 2e-08 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G23070 51 / 3e-07 ATCFM3A CRM family member 3A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040080 [exp] 364 / 9e-127 AT5G54890 484 / 2e-172 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10036545 [exp] 221 / 1e-70 AT4G31010 446 / 8e-157 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10041383 [exp] 216 / 1e-68 AT4G31010 526 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10012974 [exp] 207 / 8e-63 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10011119 [exp] 204 / 8e-62 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10043237 [exp] 204 / 9e-62 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10029134 [exp] 196 / 3e-59 AT1G23400 712 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10013029 [exp] 188 / 2e-55 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10034952 [exp] 150 / 4e-43 AT2G20020 274 / 2e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423800 [exp] 336 / 4e-116 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G074400 [exp] 231 / 2e-74 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Potri.006G163100 [exp] 208 / 8e-63 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G042500 [exp] 198 / 3e-60 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 57 / 3e-09 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.012G056100 [exp] 54 / 3e-08 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G350801 [exp] 53 / 7e-08 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10019623 pacid=23142558 polypeptide=Lus10019623 locus=Lus10019623.g ID=Lus10019623.BGIv1.0 annot-version=v1.0 ATGATACGTTGGTCACCCACTCATGGATTGCGCAATCCCCCAAGGTATAATCCGGCTCAGGCCAGACATGTTGAGTATGCCTACAGATGCTGCTCACACG GGAAAGGAGGAGTGACTCATAATATGTTGGATGATATCCACAACCATTGGAAACGAGCTGAAGCCGTCAGAATCAAGTGCTTGGAGGTTCCAACTCTAGA TATGGACAATGTCTGCTTCCACCTTGAGGACAAATCTGGTCGGAAGATTATATACCGGCACATCAACGTCCTTCTTTTGTATCGGGGGAGAAACTATGAT CCCAAGAATCGGCCTCGTATTCCCTTGATGCTATGGAAGCCTTATCCACCTATTTATCCAAGGCTTGCCAAGAATGTTGCTGATGGCTTAACATTTGAAG AAACCAAGGAAATGAGGAACAGAGAACTCAATTCTCTTCCGCTCATGAAGCTTCCCAGAAATGGTGTTTATGTGAATGTAGTGGATAGGGTGAGTGAGGC TTTCACTACAAAAGAGGTTGTGAGACTTGATTGCACGCATGTCGGTACCAGTGACTGCAAAAGGATTGGTGTGAAGCTAAGGGATTTAGTGCCTTGTGTT CCTATTTTGGTCAAGGACGAGCAGGTTATACTTTGGAGGGGGAGGGTTGACAAGGGTCAGCAGCATGATTCTTCAGCTATTCCAGCTGCAGACCCTTCCT CAGATGATTAA
AA sequence Show only first row Show all	>Lus10019623 pacid=23142558 polypeptide=Lus10019623 locus=Lus10019623.g ID=Lus10019623.BGIv1.0 annot-version=v1.0 MIRWSPTHGLRNPPRYNPAQARHVEYAYRCCSHGKGGVTHNMLDDIHNHWKRAEAVRIKCLEVPTLDMDNVCFHLEDKSGRKIIYRHINVLLLYRGRNYD PKNRPRIPLMLWKPYPPIYPRLAKNVADGLTFEETKEMRNRELNSLPLMKLPRNGVYVNVVDRVSEAFTTKEVVRLDCTHVGTSDCKRIGVKLRDLVPCV PILVKDEQVILWRGRVDKGQQHDSSAIPAADPSSDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10019623 [exp]	0	1
AT1G54650			Methyltransferase family prote...		Lus10005515 [exp]	4.5	0.8942
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	7.3	0.9016
AT1G50575			Putative lysine decarboxylase ...		Lus10003762 [exp]	7.3	0.8948
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10008977 [exp]	14.5	0.8835
AT1G30140			unknown protein		Lus10024751 [exp]	14.8	0.8976
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	15.0	0.8822
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	15.3	0.8931
					Lus10032802 [exp]	16.4	0.8703
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	17.2	0.8868
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	19.4	0.8824

Compare expression of checked genes

Lus10019623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.