Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20500 667 / 0 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52820 508 / 1e-179 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52780 486 / 5e-171 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G52810 483 / 2e-169 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT5G34850 316 / 1e-103 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT4G36350 312 / 3e-102 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT1G56360 310 / 3e-101 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT2G16430 298 / 9e-97 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 298 / 1e-96 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT3G07130 291 / 3e-93 ATPAP15, PAP15 purple acid phosphatase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040079 [exp] 849 / 0 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10017056 [exp] 501 / 8e-177 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10021377 [exp] 498 / 4e-175 AT3G52820 603 / 0.0 purple acid phosphatase 22 (.1) Lus10021376 [exp] 485 / 2e-171 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10021378 [exp] 493 / 2e-167 AT3G52820 597 / 0.0 purple acid phosphatase 22 (.1) Lus10017059 [exp] 432 / 6e-150 AT3G52820 536 / 0.0 purple acid phosphatase 22 (.1) Lus10017057 [exp] 328 / 8e-111 AT3G52780 375 / 1e-129 Purple acid phosphatases superfamily protein (.1.2) Lus10008054 [exp] 334 / 2e-110 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1) Lus10039978 [exp] 333 / 1e-109 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423700 [exp] 682 / 0 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.011G138200 [exp] 678 / 0 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 496 / 2e-174 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.006G063700 [exp] 326 / 2e-107 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 325 / 6e-107 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.004G160100 [exp] 315 / 5e-103 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G123700 [exp] 314 / 1e-102 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.002G029300 [exp] 314 / 1e-102 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.003G176000 [exp] 315 / 5e-102 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.005G233400 [exp] 310 / 2e-101 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10019625 pacid=23142544 polypeptide=Lus10019625 locus=Lus10019625.g ID=Lus10019625.BGIv1.0 annot-version=v1.0 ATGAGCATGGACCCAAATTTGGCTTTCTCGCTTGTTCTGCTTCTATCTCTAGGGCTAGCTGCTGTCTCCGCCGAATATGTGAGGCCGCCACCTAGGAAAA CCCTTGAATTTCCATGGAGTAAGAAAGACTCCTCCCATCCTCAGCAGGTGCACATCTCTTTAGCTGGGGAAAAGCACATACGAATCTCGTGGGTCACGGA TGATAAATCCGCTCCTTCCACTGTCAAATATGGAACGTCTTCTGGGAAATACGATGCTACATCTCATGGAGAAAGCACTTCTTATAAGTATCTGTTTTAC AGTTCTGGGAAGATCCATCATACTGTCATTGGTCCACTTCAACCCAACACCGGTTACTTTTACCGGTGCGGTGGACAAGGCATCGAGTATCAGCTCAAGA CCCCTCCTGACCGTTTCCCTGTTACCTTTGCTGTGGCTGGTGATTTAGGGCAAACTGGCTGGACCCAATCCACCTTAGCCCATATTGACCAATGCAAATA TGATATGCATCTACTTCCTGGAGATCTCTCATATGCTGATTACATGCAGCACCGTTGGGATACTTTTGGTCAACTCGTTGAACCATTAGCCAGTTCTAGG CCTTGGATGGTGACACAAGGAAACCACGAAAAGGAAAACATACCACTTTTGGTTGATGGTTTCGAGTCCTATAACTCCAGATGGAAGATGCCATATGAAG AGAGTGGATCAAGTTCAAATCTTTACTATTCTTTTGAAATAGCTGGAGCTCATATTATCATGCTTGGCTCGTATACTGATTATGACAAATACTCGGATCA ATATAACTGGCTCAAGGCTGATCTTGCCAAGGTTGATCGGGAGAAAACACCCTGGCTCCTTGTGCTCTTTCATGTCCCTTGGTATAACAGTAATAGTGCT CATCAAGGTGAAGGAGATGACATGAAAGCAGTTGTGGAGCCATTACTCTATGATGCTAAAGTGGATATGGTGCTTGCAGGCCATGTACATGCATATGAGC GCACGGAGCGAGTGTATAATTGGAACTCCGATCCCTGTGGTCCTGTGTATATAACCATTGGAGACGGAGGAAACAAAGAAGGTTTAGCCACAAAGTACAT GGATCCACATCCAAAATGGTCAGCGTTCCGAGAGGCAAGCTTTGGCCATGGTGAGTTCCAAATCTCAAACTCCACTCATGCATTCTGGAGTTGGCACAGG AACGACGATGATGAACCTGTTAGATCCGACTCGATCTGGATAAACTCTTTGGTGAGCTCAGGATGCCTTGCTGAACAAAAGTGGGGTTCAATGAAGAGCC TTAAAGGTTGA
AA sequence Show only first row Show all	>Lus10019625 pacid=23142544 polypeptide=Lus10019625 locus=Lus10019625.g ID=Lus10019625.BGIv1.0 annot-version=v1.0 MSMDPNLAFSLVLLLSLGLAAVSAEYVRPPPRKTLEFPWSKKDSSHPQQVHISLAGEKHIRISWVTDDKSAPSTVKYGTSSGKYDATSHGESTSYKYLFY SSGKIHHTVIGPLQPNTGYFYRCGGQGIEYQLKTPPDRFPVTFAVAGDLGQTGWTQSTLAHIDQCKYDMHLLPGDLSYADYMQHRWDTFGQLVEPLASSR PWMVTQGNHEKENIPLLVDGFESYNSRWKMPYEESGSSSNLYYSFEIAGAHIIMLGSYTDYDKYSDQYNWLKADLAKVDREKTPWLLVLFHVPWYNSNSA HQGEGDDMKAVVEPLLYDAKVDMVLAGHVHAYERTERVYNWNSDPCGPVYITIGDGGNKEGLATKYMDPHPKWSAFREASFGHGEFQISNSTHAFWSWHR NDDDEPVRSDSIWINSLVSSGCLAEQKWGSMKSLKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10019625 [exp]	0	1
AT2G23780			RING/U-box superfamily protein...		Lus10022492 [exp]	3.0	0.8448
AT5G18130			unknown protein		Lus10005702 [exp]	4.0	0.8200
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	4.0	0.8398
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	6.2	0.8372
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10040171 [exp]	10.9	0.7159
AT4G25270		OTP70	organelle transcript processin...		Lus10031714 [exp]	12.1	0.7959
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10040225 [exp]	12.7	0.7966
AT1G71840			transducin family protein / WD...		Lus10033710 [exp]	15.9	0.7817
AT3G57120			Protein kinase superfamily pro...		Lus10038716 [exp]	16.5	0.7565
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10017776 [exp]	18.3	0.7955

Compare expression of checked genes

Lus10019625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.