Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033028 [exp] 115 / 2e-32 ND / Lus10031015 [exp] 109 / 3e-30 ND / Lus10030050 [exp] 95 / 3e-26 ND 36 / 0.003 Lus10038331 [exp] 99 / 2e-25 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10039431 [exp] 93 / 1e-24 ND / Lus10025040 [exp] 90 / 2e-24 ND / Lus10008397 [exp] 87 / 2e-23 ND / Lus10019581 [exp] 89 / 7e-23 ND / Lus10032966 [exp] 92 / 1e-22 AT5G15540 337 / 3e-99 EMBRYO DEFECTIVE 2773, ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, PHD finger family protein (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019626 pacid=23142535 polypeptide=Lus10019626 locus=Lus10019626.g ID=Lus10019626.BGIv1.0 annot-version=v1.0 ATGGTGGCCGACAATACTATTGCTGGGTACAGTCTTCGGCTGTGTACCGATGAAGAGTCTTGGAGAGCTATTTACTACATGCTGTATTTTATGTTCGAAG GTCCAATCGACAGAGTGTGTGGCTCAGTTGGTCAATCCTCAATGACTGGGTACTTTGAACCTTCTGGTTCACATAACATTGACGAGGTTTCACAGTGTGG CGTACAACCCACCGCTGATCTCGTGGATGAAGATGACGTTAACGGCGAGCCTACGTACGATCCGGGTAACAACAATGGGGAAGGGGACGATGACCAGGCC TCGAGTGAGGACGACGGCGGTACGCCGATTGGCCCTCTCCATCCAGATGGGAGGATGTTGGTGTTATAA
AA sequence Show only first row Show all	>Lus10019626 pacid=23142535 polypeptide=Lus10019626 locus=Lus10019626.g ID=Lus10019626.BGIv1.0 annot-version=v1.0 MVADNTIAGYSLRLCTDEESWRAIYYMLYFMFEGPIDRVCGSVGQSSMTGYFEPSGSHNIDEVSQCGVQPTADLVDEDDVNGEPTYDPGNNNGEGDDDQA SSEDDGGTPIGPLHPDGRMLVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019626 [exp]	0	1

Compare expression of checked genes

Lus10019626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.