Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20490 215 / 3e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040077 [exp] 602 / 0 AT3G20490 177 / 1e-49 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G139200 [exp] 313 / 1e-101 AT3G20490 261 / 1e-81 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019628 pacid=23142557 polypeptide=Lus10019628 locus=Lus10019628.g ID=Lus10019628.BGIv1.0 annot-version=v1.0 ATGGCCGATATAGAACCTCCGTCCTTCTCACTCGACCTCGATTTTGACGCTGAACCTCAACCGTGTGATCCTCCACCACCGTCGCCTCCCAGCCCTCCGG CATGCCGACCACTGTGGGAACAAGACGAAGAAGATCTCGAAATCCAGGTCATGGATTCTGAAGACGAAGATGAAAAACGTCGCTCCACAGTTCAGATCAA TACCAGCCCTCTTGTTACCGCTCCTCAGATCCTTAAGCGCCTCAGGCGAGGAGGAGTAATTCCGATCCAGGAATCGAAAACGAAGCTAAAAAATGAATTG GGTTCTCTACCATTCCAGATTGCTGACGATGACATTGAAGATTTCTCTTCTGAGGACGACGATTTCGTTGCAGATTTGGTGCTTCCATCAAAGCATTACA ACTCGGTATGTAGTAGTTCAAAAGCTTCACTTGGTGGATCAGGAGTTTTAACACCTCAACCATCAGCTCAGACAATCTCAAAGCTAAAGCTAAAGGGTAA GGCTTTCGACTCACCAGCTTCATCAAGTTTAGAGACGGGTCACAGTGGATTGGTGTTTCCAAAGATAACTGCCAGCCCTCTCAGAAGGTTTCGGTTGAAT GATTCGGATGAAGAGCCTGCGAATGCGAATAGAAAACCTGCAAAGGTTGTGTCACAATCGACTAGACAAGGCTCCTCCACTGCAACTGGACAGAGTGGGA AATCAGCAGCAGGTACCAATCCTAAGATTGAGGACCTCTGGAAGAATTTTCGTCCTGTTCAAAGTGCTCCCATCAAAACACCTGCTTTGGATGCATTCTG CAATGAGTATTTTCAATCTGTTAAAGATAAGAATTCAGCTACTAGACTTGGAGATGATGCTTATACAAATAACACCGTAAGGAATCATCATCATCATCGT CATCATCAGGATCAGGATCCCAGTGTCATGGTGGAATCGGAACAATGCCAGAAGGGGAATGTCCATTTTTCCCCAGCTCATCACTATTTCTTCCACAATG ATGCAAGGATTCGGGTTTTAGTACGAAATCAGTTGCCCCACTTCTTCCCTGCGGGCGTGGCTAAAGCCAGAGGGAATGAGCAGCCAAGTGAACACCTTGT TGACTACAGGAGCCAATTTGGGGGAGCCTCTAAAAGCGGTGGAACTAATGCAAACATGGAGAAAGGCTCCACTAGTGGAAGAAAGAGAGCAAAGAAATCA GAATCTTCTCAGCCATGGGTGGACCCTAGAACAACAGCTAGTGTTCCCAAGGATGCTGGTAGAAGACGAGTTCAAGCAAGTGGTCAAGCCGCTGCTGCTG GCCATTGGGTTACATCCCCAGAAGGGAGAAAGGTTTACGTCGCCAAAAGCGGACAGGAGTTCACAGGACAAACTGCCTACAGACAATTCAAAAGGGATTC TGGAGGATACAGAAAGTCGAAAAAGAAGAGCACCAGCAAGAGGAAGAAAACACGTTAA
AA sequence Show only first row Show all	>Lus10019628 pacid=23142557 polypeptide=Lus10019628 locus=Lus10019628.g ID=Lus10019628.BGIv1.0 annot-version=v1.0 MADIEPPSFSLDLDFDAEPQPCDPPPPSPPSPPACRPLWEQDEEDLEIQVMDSEDEDEKRRSTVQINTSPLVTAPQILKRLRRGGVIPIQESKTKLKNEL GSLPFQIADDDIEDFSSEDDDFVADLVLPSKHYNSVCSSSKASLGGSGVLTPQPSAQTISKLKLKGKAFDSPASSSLETGHSGLVFPKITASPLRRFRLN DSDEEPANANRKPAKVVSQSTRQGSSTATGQSGKSAAGTNPKIEDLWKNFRPVQSAPIKTPALDAFCNEYFQSVKDKNSATRLGDDAYTNNTVRNHHHHR HHQDQDPSVMVESEQCQKGNVHFSPAHHYFFHNDARIRVLVRNQLPHFFPAGVAKARGNEQPSEHLVDYRSQFGGASKSGGTNANMEKGSTSGRKRAKKS ESSQPWVDPRTTASVPKDAGRRRVQASGQAAAAGHWVTSPEGRKVYVAKSGQEFTGQTAYRQFKRDSGGYRKSKKKSTSKRKKTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20490			unknown protein		Lus10019628 [exp]	0	1
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	1.7	0.9766
AT3G42660			transducin family protein / WD...		Lus10021720 [exp]	3.0	0.9684
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	3.7	0.9687
AT1G26330			DNA binding (.1.2)		Lus10000645 [exp]	5.9	0.9613
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	7.0	0.9585
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	7.7	0.9615
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	9.8	0.9606
AT2G37960			unknown protein		Lus10021116 [exp]	9.9	0.9576
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	11.7	0.9578
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	12.0	0.9523

Compare expression of checked genes

Lus10019628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.