Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72620 247 / 6e-80 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 243 / 2e-78 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 202 / 5e-63 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 200 / 4e-62 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 192 / 8e-59 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 189 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 163 / 6e-48 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 147 / 1e-41 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 139 / 2e-38 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 57 / 7e-09 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022106 [exp] 464 / 8e-166 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 268 / 3e-88 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 213 / 5e-67 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 204 / 1e-63 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 180 / 3e-54 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 179 / 8e-54 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 149 / 5e-42 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 126 / 7e-34 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10036159 [exp] 115 / 2e-30 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168600 [exp] 281 / 5e-93 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G097400 [exp] 223 / 9e-71 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 201 / 2e-62 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 201 / 2e-62 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G074066 [exp] 196 / 2e-60 AT4G39955 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 195 / 4e-60 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117100 [exp] 152 / 8e-44 AT2G18360 304 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 148 / 3e-42 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117000 [exp] 147 / 9e-42 AT2G18360 311 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116800 [exp] 147 / 1e-41 AT2G18360 316 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10019631 pacid=23142541 polypeptide=Lus10019631 locus=Lus10019631.g ID=Lus10019631.BGIv1.0 annot-version=v1.0 ATGGAATTCAACAACAGCCGTCTCCGGCAGTTCCTCCGACGCCACTCTATCCGGTCACTACTCTCCTCCGCCGCCGCCAGCTTCCCAAACTTTATAACAA TATTGTTGGCCACATTGCTGGACACCCTTTTCTCCCTGTACTTCATGTCATGCAACATGTTCCCATCCACCATCAACTTAGACGACGACGACGATCAAAA CACAACTAAAACCGTCCATCTCTGGATCACGGGCCACCGGGATGCCAACAAGCCGTCGATCGTGTTGATCCACGGGTTCGGAGGGAACTCAAGGTGGCAG TTCTACAACCAAGTTAGACATCTCTCCCAAAATTTCAACGTCTACATCCCAGATCTACTCTACTTCGGCAAGTCATATTCGAGCAGGCCGGAGAGGTCGA TCGAGTTCCAAGCTGATTGCATAGGGAAAGGGTTGAAGAAGTTAGGGCTGGAGAGGTATAGCATAGTAGGGTTGAGCTACGGCGGGTACGTGGGTTATCG AATGGCGCAAGTGTACGAGGAGGAGGTGGATAAAGTTGTGATTATAAGTTCAGGGATCTACCAAAGCAACCAGCAGATGGTTGATCAATTGAAAACTCTT GGGGATGATGTTAAGATTGAGCAGCTTTTGGTGCCACAAAAGCCTGACCATGTTAGAAAGATGGTTGAGCTTGCTATGTACAAGTCTGCACGTTTCCGAT ATACCCCCGATTTTATCCTCACAGGGTTTATTAAGGGAATTAATAATAAAAACAAGGAAGAGAAATTGAAGCTGGTGGATCACTTGATGAAGAAACACCA TTCAAAACCACCCCTCATAACTCAGGAAACGTTGCTAATATGGGGCGAGCAGGATCGGGTCTTTCCGTTGCATTTAGCTTATCAACTTCAGAGACATTTG GGGCCAAATGCAAGAGTGGAGGTACTCAAGGAAACAGGGCATGCCGCCAACATAGATTCGCCTGAGGAAGTTAATAGATTGATAACATCATTTGTGTTGT AG
AA sequence Show only first row Show all	>Lus10019631 pacid=23142541 polypeptide=Lus10019631 locus=Lus10019631.g ID=Lus10019631.BGIv1.0 annot-version=v1.0 MEFNNSRLRQFLRRHSIRSLLSSAAASFPNFITILLATLLDTLFSLYFMSCNMFPSTINLDDDDDQNTTKTVHLWITGHRDANKPSIVLIHGFGGNSRWQ FYNQVRHLSQNFNVYIPDLLYFGKSYSSRPERSIEFQADCIGKGLKKLGLERYSIVGLSYGGYVGYRMAQVYEEEVDKVVIISSGIYQSNQQMVDQLKTL GDDVKIEQLLVPQKPDHVRKMVELAMYKSARFRYTPDFILTGFIKGINNKNKEEKLKLVDHLMKKHHSKPPLITQETLLIWGEQDRVFPLHLAYQLQRHL GPNARVEVLKETGHAANIDSPEEVNRLITSFVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10019631 [exp]	0	1
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	1.4	0.9797
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10004887 [exp]	2.4	0.9784
AT3G59310			Eukaryotic protein of unknown ...		Lus10025530 [exp]	3.5	0.9684
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	3.9	0.9753
AT3G59310			Eukaryotic protein of unknown ...		Lus10026744 [exp]	4.5	0.9640
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	5.0	0.9692
					Lus10016571 [exp]	5.2	0.9656
AT1G68585			unknown protein		Lus10035025 [exp]	5.9	0.9679
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	6.3	0.9744
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10024589 [exp]	9.2	0.9575

Compare expression of checked genes

Lus10019631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.