Plant FIBer expression Database

Lus10019632 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G40087 86 / 2e-18 Plant transposase (Ptta/En/Spm family) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021763
[exp]
235 / 5e-77 ND /
Lus10035798
[exp]
165 / 1e-44 AT1G40087 101 / 1e-22 Plant transposase (Ptta/En/Spm family) (.1)
Lus10014482
[exp]
42 / 7e-05 ND 38 / 3e-04
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03004 Transposase_24 Plant transposase (Ptta/En/Spm family)
Representative CDS sequence
>Lus10019632 pacid=23142542 polypeptide=Lus10019632 locus=Lus10019632.g ID=Lus10019632.BGIv1.0 annot-version=v1.0
ATGGAAGAAGGCGAGCGGATTCCTATTTCACTGAATAATGATTTACAACCTGTTGGTCGGAATGCTTCAAAGTTAGGCTTCTTTTTGGGAGTTTTAGCAC
GAAAAACAACCTTTGCACCTATACAGTATGAGGATTGGAGGTTGATGCCGGAAAGGCACAAAATTGAAATGTGGAATATGGTCCAGGAAAAGTTCGACAT
CGATATATTAGCTAAACCTTGGGTGATGACTTCTCTGGCTAAAAAGTGGAAGAATTTCAAAGCAACCGTGAAGAAAGATTGGAACAAGCACAACAAACGG
GACCCAAGAATATCTAATGATGATTGGCAATGGTTGTTGGATTTCTGGAATGGCGATAAAGCTAAGAAACGTGAAGTTGTGGGAAAAGCTAACAGGAACG
GTCTGGATTCAGCTCATACATTAGGCAACAAAAGTTATGCTCGTTTGAGGAATGAGATGAAACAATCTAGACTTGATAAGTCAGAGCCTTCTCGCGCAGA
AGTGTACATTAAAAGTCATTTGCGTTCAAATGGAGCACCATTGAACACTAAAGTAGCTGAAACTATTGGAAAGCTTAAGCACAAAATGAAAAATAACCCT
CTTACTTTGAATGGTGCTGGTGATAATGATTTATTAGCAGAAGTAATGGGGCGAGAGAAATGTAAAGAAAACACAACATTTGGGTTAGGATCTCTAAGAA
ATGCAAAAACCTCTCGCATGCAGATTGTTAGGGAAGCATTGGTGGCCAAATCAAATGCGGAAGACAAGGAACGGAAGTTGCGAGAAGAAATGAATAAAAT
GATGGAACAACAAGAGAAGATCATCTCTTTCCTCCAAAAGTTATATCCCCATATTAACTTGGATGAAATGATGAGTTCACAGAATCCGGAGGATGATGAT
AACACATCGGTTGAGCACCTTGATGAATTTAATCATGATGAAGAAGAGAATACTTTAGGAAACGGTCATCTTCTTCCTCTATTGCAATCCTTGCATACAG
CATTAGACCAATCACAATCACAAGATGGACAAGTTGCCCATGATGCCTTCTTGGATGTAATGATAAACAATTACCCAATAACAATTATGCCATATAGCTG
GCAGATTTCTTGTGATGGAATTTCACTTGAAGCTGATACTAGACTAACACAAAGATTATAA
AA sequence
>Lus10019632 pacid=23142542 polypeptide=Lus10019632 locus=Lus10019632.g ID=Lus10019632.BGIv1.0 annot-version=v1.0
MEEGERIPISLNNDLQPVGRNASKLGFFLGVLARKTTFAPIQYEDWRLMPERHKIEMWNMVQEKFDIDILAKPWVMTSLAKKWKNFKATVKKDWNKHNKR
DPRISNDDWQWLLDFWNGDKAKKREVVGKANRNGLDSAHTLGNKSYARLRNEMKQSRLDKSEPSRAEVYIKSHLRSNGAPLNTKVAETIGKLKHKMKNNP
LTLNGAGDNDLLAEVMGREKCKENTTFGLGSLRNAKTSRMQIVREALVAKSNAEDKERKLREEMNKMMEQQEKIISFLQKLYPHINLDEMMSSQNPEDDD
NTSVEHLDEFNHDEEENTLGNGHLLPLLQSLHTALDQSQSQDGQVAHDAFLDVMINNYPITIMPYSWQISCDGISLEADTRLTQRL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G40087 Plant transposase (Ptta/En/Spm... Lus10019632
[exp]
0 1

Lus10019632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.