Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66870 175 / 8e-53 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT2G23660 162 / 2e-47 AS2 LBD10 LOB domain-containing protein 10 (.1.2) AT3G27650 154 / 2e-46 AS2 LBD25 LOB domain-containing protein 25 (.1) AT5G63090 154 / 6e-46 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT1G65620 152 / 5e-45 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT2G30130 145 / 1e-42 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT1G07900 142 / 3e-41 AS2 LBD1 LOB domain-containing protein 1 (.1) AT2G28500 141 / 1e-40 AS2 LBD11 LOB domain-containing protein 11 (.1) AT1G31320 137 / 9e-40 AS2 LBD4 LOB domain-containing protein 4 (.1) AT1G16530 128 / 3e-36 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009337 [exp] 332 / 5e-114 AT2G23660 183 / 7e-56 LOB domain-containing protein 10 (.1.2) Lus10016769 [exp] 188 / 4e-58 AT5G66870 222 / 3e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10022463 [exp] 187 / 1e-57 AT5G66870 221 / 8e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10005313 [exp] 174 / 2e-53 AT5G66870 209 / 4e-67 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10025840 [exp] 157 / 1e-46 AT5G66870 184 / 4e-57 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10006679 [exp] 157 / 6e-46 AT5G66870 169 / 1e-50 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10038261 [exp] 157 / 7e-46 AT5G66870 179 / 2e-54 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10007024 [exp] 149 / 4e-43 AT5G66870 173 / 2e-52 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10009336 [exp] 148 / 4e-43 AT5G66870 170 / 6e-52 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G134900 [exp] 175 / 6e-53 AT5G66870 254 / 8e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.007G039500 [exp] 171 / 2e-51 AT5G66870 256 / 1e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.012G083500 [exp] 155 / 1e-46 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.015G082200 [exp] 155 / 1e-46 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.010G177100 [exp] 152 / 9e-45 AT1G65620 288 / 5e-100 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.008G079800 [exp] 152 / 9e-45 AT1G65620 263 / 7e-90 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.001G345700 [exp] 149 / 2e-44 AT3G27650 208 / 5e-70 LOB domain-containing protein 25 (.1) Potri.008G072800 [exp] 146 / 2e-43 AT2G30130 229 / 8e-78 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.010G184400 [exp] 145 / 4e-43 AT2G30130 227 / 7e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.005G097800 [exp] 144 / 1e-42 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10019633 pacid=23139210 polypeptide=Lus10019633 locus=Lus10019633.g ID=Lus10019633.BGIv1.0 annot-version=v1.0 ATGGCAATGGCATCGCCGGTGTCACACAACTCGCCATGCGCGGCCTGCAAGTTCCTCCGCCGCAAATGCACGAGCGAGTGCGTGTTCGCTCCCTACTTCC CGCCGGAGCAGCCATCGAAGTTCGCCACCGTCCACCGCGTCTTCGGCGCGAGCAACATCGCCAAGATCCTGAACGAACTCCCGGCCTCCGACCGCGAGGA CGCCGTCACGTCGCTCTTCTACGAAGCCGACGCCAGACTCCGCGACCCCGTCTACGGCTGCGTCGGATACATCTCCCACCTCCAGCAGCGGCTCAAGGAG CTCCACTTCAATCTCGAATCCGCCAGGCACCAGCTGTCCTGCTACGTCTCACCACCACCAGTACCGCCAGTCACCTCCAATTTCAACCCCAATCCGACGC CGTTTCCTCAGCAGATGCCGATGATGACGAGTGTTCCCGGCGTCCCCGGCGGGCAGATAATCAACAACAACAACCTGCAACAACAGCCACAACAGCAACA GCAACAGTTTCACAATCTGATGCAGGTGCAGGAGTTGCAGCAGCAGATGGGGCCAGGATCCTCTATGGCGCAGCAGGAGATGATAATGAGAGCCTACGAT CAGCAATTGCAGCAGATTCAGCAGGAGGCGATTTGCAGAGGAGGGGATAATGGATCTGTTACGCTGGCAGGGTACAACCAGATTGGGAATCATCAGCATC ATCAACACCAACATCATCACAAGAGTGTGTCTCCAATATCGCTAGGGATTGGAAGGGATATTCATGATGGGAGTAGTACTGTGGCGCCGCCAGCTGTAGG AGGGATTAATCATGATGATGATGATGATGATGGACGGTTTCAGCTTTTCCTGCAGCAGCCGCCGCAGCAGGAAAGGGCAGAGGAGGAGGAGGAGACTGGT AGGAGTAGGAGCAACCTCATTGGTCCTTAA
AA sequence Show only first row Show all	>Lus10019633 pacid=23139210 polypeptide=Lus10019633 locus=Lus10019633.g ID=Lus10019633.BGIv1.0 annot-version=v1.0 MAMASPVSHNSPCAACKFLRRKCTSECVFAPYFPPEQPSKFATVHRVFGASNIAKILNELPASDREDAVTSLFYEADARLRDPVYGCVGYISHLQQRLKE LHFNLESARHQLSCYVSPPPVPPVTSNFNPNPTPFPQQMPMMTSVPGVPGGQIINNNNLQQQPQQQQQQFHNLMQVQELQQQMGPGSSMAQQEMIMRAYD QQLQQIQQEAICRGGDNGSVTLAGYNQIGNHQHHQHQHHHKSVSPISLGIGRDIHDGSSTVAPPAVGGINHDDDDDDGRFQLFLQQPPQQERAEEEEETG RSRSNLIGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10019633 [exp]	0	1
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10006160 [exp]	4.8	0.7412
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	7.3	0.7265
					Lus10010827 [exp]	9.0	0.7265
					Lus10022511 [exp]	10.4	0.7265
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	11.6	0.7265
					Lus10005843 [exp]	12.7	0.7265
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	13.7	0.7265
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	14.7	0.7265
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036381 [exp]	15.6	0.7265
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	16.4	0.7227

Compare expression of checked genes

Lus10019633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.