Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66860 254 / 1e-85 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) AT4G23620 127 / 1e-35 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009338 [exp] 388 / 4e-138 AT5G66860 297 / 4e-102 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Lus10000590 [exp] 113 / 5e-30 AT4G23620 329 / 2e-114 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2) Lus10011005 [exp] 110 / 5e-29 AT4G23620 328 / 4e-114 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135000 [exp] 298 / 1e-102 AT5G66860 320 / 5e-111 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Potri.007G039700 [exp] 295 / 3e-101 AT5G66860 315 / 4e-109 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Potri.001G097801 [exp] 122 / 8e-34 AT4G23620 320 / 4e-111 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019634 pacid=23139253 polypeptide=Lus10019634 locus=Lus10019634.g ID=Lus10019634.BGIv1.0 annot-version=v1.0 ATGGCACAGTATTGGCGCGGACTTAAAACGGCAGCGAAATTCACTCCGTCTCCGCCATCCCCTCTCTACTCCCAGTCCCAGTACTATCTATACCACACGA TCCAGGCGATCCCTCGTGAAGCCACCGGAAGCCGAGTCGCGGATCGAGACAGAGCTCAAGGTAGGATTCCGGCCGTGGTTTTCTCCCAGAGCATCCTCGA TAAGAGCCCTAACTCTCGTTCCTCGTCGAGGAAGCGGCTGCTGACTACGGAGAAGAAGCAGATTCTGTCCATCTTGAAGTCACTCGATTCTCCCTATTTC TGCTCCACCACGTTTCCGCTCCAGATTCGGGCTGGATCCGGGTCATCCGTGTTGCTCGAGTCCGGGAACGTCCTTCCTGTTAAGGTACATAGAGATAAAG AGACTGGAAAGATTATGAATTTGGTATTTGTTTGGGCTGATCCAGGCACTGAATTGAAAGTTGACGTGCCGGTTGTTTTCAAAGGAGAAGAGAATTGCCC TGGTCTACTGAAAGGTGGCCGGTTGAACCGTTTAAGAGACACCCTCAAGCTACTATGCCGTGCTGAAAACATCCCTCAAAAGATTGAGGTGGACCTGAGC AACCTAGACACCGGGGAGAGAGTATCGGTGCGTGATGTCAATATCGACCCCACACTAAAGCTTCTAACCAAGGACGAGTCCCTCCCTGTATGTAAGGTCG TTTCAACAAACTCGAAAGCATCAGACCCTGTTTCGGTATAG
AA sequence Show only first row Show all	>Lus10019634 pacid=23139253 polypeptide=Lus10019634 locus=Lus10019634.g ID=Lus10019634.BGIv1.0 annot-version=v1.0 MAQYWRGLKTAAKFTPSPPSPLYSQSQYYLYHTIQAIPREATGSRVADRDRAQGRIPAVVFSQSILDKSPNSRSSSRKRLLTTEKKQILSILKSLDSPYF CSTTFPLQIRAGSGSSVLLESGNVLPVKVHRDKETGKIMNLVFVWADPGTELKVDVPVVFKGEENCPGLLKGGRLNRLRDTLKLLCRAENIPQKIEVDLS NLDTGERVSVRDVNIDPTLKLLTKDESLPVCKVVSTNSKASDPVSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10019634 [exp]	0	1
AT3G59820			LETM1-like protein (.1.2)		Lus10025602 [exp]	1.4	0.9409
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10030113 [exp]	4.8	0.9502
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10027922 [exp]	8.5	0.9237
AT3G21110		PUR7, ATPURC	PURIN C, purin 7 (.1.2)		Lus10025652 [exp]	9.2	0.9067
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10011685 [exp]	9.2	0.9361
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	13.4	0.9368
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	15.5	0.9350
AT2G26830		EMB1187	embryo defective 1187, Protein...		Lus10019424 [exp]	15.7	0.9041
AT1G77030			hydrolases, acting on acid anh...		Lus10018941 [exp]	16.1	0.9275
AT3G04600			Nucleotidylyl transferase supe...		Lus10026754 [exp]	16.5	0.9309

Compare expression of checked genes

Lus10019634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.