Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66850 554 / 0 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G63700 335 / 5e-103 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 318 / 2e-99 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G09000 250 / 2e-73 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 244 / 2e-71 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT4G08500 236 / 1e-68 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT3G06030 230 / 3e-66 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08470 221 / 1e-63 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 223 / 1e-62 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT3G13530 216 / 7e-59 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009339 [exp] 1129 / 0 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10022461 [exp] 697 / 0 AT5G66810 756 / 0.0 unknown protein Lus10016768 [exp] 492 / 1e-167 AT5G66850 460 / 3e-155 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10021766 [exp] 456 / 1e-149 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10032279 [exp] 350 / 2e-108 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 348 / 3e-108 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 345 / 1e-107 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 343 / 3e-106 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10038858 [exp] 315 / 3e-96 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135100 [exp] 655 / 0 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.007G039800 [exp] 637 / 0 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 446 / 7e-147 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 434 / 1e-142 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.001G102900 [exp] 350 / 1e-108 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 348 / 1e-107 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 345 / 9e-107 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 339 / 2e-104 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 317 / 2e-98 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G106800 [exp] 316 / 2e-98 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019635 pacid=23139185 polypeptide=Lus10019635 locus=Lus10019635.g ID=Lus10019635.BGIv1.0 annot-version=v1.0 ATGCGCTGGCCAAACCTATCCTTCTCTTTAAATTCCTTCTCCGCTCGTTCGGCCTCCGTAACCTCTCCTAAACCTTCCTCTTCTTGCTCCGGCGCCGATG AGGCATCGCCATCGCCTGCGCTTCACCACAAGAACAACAATAGGAAGCACCATGGATCGCCGAGCCTCGCCCCTAGCCACACGTTTGGATTCCGCCTCCG TTCCAGCTCTACCGGCATGCCCAAGCTCACCCGCCAGAAGAAGCTCCGACACCTAACCGACAGGGATGTTTTCTCCGACGAGATCTCTTACGAGCCTGAG CTCTCCCGCTCTAAGAGCGCTTCCTCGTCTCCGCGCCGGTCCGTCACCGCACCTCTCCCGGTTCCTCTGCCGTTGCCTCAGCCTTCGAATCCCGGCGAGG CGGACTCGCGGTTGCGGTCTCCGAAGGAGAAGGATCGCGATGGTTCTAGAGAGAAGAGCAATGGTGACGGAATCGGGATCTCCTTCTCCGCTTCCGCTCC TTCCAGTGTATTGGGAGGGCGAGAAACAAAGATGACAGCAGAACAACACCAGGAGACAAGATCAGATAGAGCAGCAGTAGGTATTGATTTGAACAATTTC GGGGTTAACAATGGTGCCAGGAATTCGTGCAACAGTCCATATGCAAGTCCTGAAGTCAGTCCACAGAGATTAATGTACGTTTTCACCACCTCGCCTTACA TAAACCAGATTCCTGGAGGGATCCAAGCTTGGTCTGCACCGGAGATGCCGACACTAGACATACCAGGGCTACCCCCTCCAGCGTGTTTTGATTTCATAGC ACATACTAGCAGTGATAGTTCTTCACCTCTTCATAATAACCCGATGGCGACCAATCGAAGTCCTCGGTCTCCTGTGACGGCTAGAACGTCATTTGAGATT ATCCCAACTGGTAGGCGTGATAACAATAGCAGTGGAAATGTTGAGGTCCACAAGTTACCTCTTCCTCCTGGAGCAAATCTCATATCTCCGACTTCGTTGT CGACTCCTCCTCTTATCCCTCCCGTGGCTGCTGCTAAACAAGAGCCTGTACCCATGAAGAGTCAGTGGCAGAAGGGAAAGCTCATTGGGCGTGGAACATT CGGAAGTGTTTATGTCGCCACCAACAGGGAAACTGGGGCATTATGTGCAATGAAAGAGGTTGACATGTTCCCTGATGATCCTAAATGTCGAGAGTGCATA AAGCAACTAGAGCAGGAGATTAAAGTTCTTAGCAAGTTGAAGCATCCCAACATTGTGCAGTACTATGGTAGTGAAATAATTGAGGACCAGTTCTATATCT ATTTAGAATATGTTCATCCCGGTTCAATCAACAAATATGTCCGTGAACATTGTGGAGCAGTAACAGAATCCATTGTTCGTAGTTTTACGCGTCATATTCT ATCCGGATTGGCATACTTGCATACCATGAAGACAGTACATAGAGACATAAAAGGGGCAAATTTGCTGGTGGATGCATCTGGGGTTGTTAAGCTAGCCGAT TTCGGGACGTCAAAGCATCTTACTGGACAAGCAGCTGAACTTTCATTGAAGGGGAGTCCTTACTGGATGGCACCAGAGCTTATGCAAGCTGTTATGCAGA AGGACAATAACTCCGATCTTGCACTCGCTGTCGATATTTGGAGCTTAGGCTGCACCGTCATTGAAATGTTCACCGGTAAACCTCCTTGGAGCGAATACGA GGGTGCTGCTGCTATGTTTAGAGTCATAAAGGACACTCCACCAGTACCTGAAACATTGTCACCTGACGGCAAGGATTTCCTCTCCTGGTGCTTCAAAAGA AACCCTGCAGAGCGGCCCTCCGCTTGCTTGTTACTAGAGCACCGGTGGCTGAAACAGCTACCTGATGCTGCTGCACCTCCTTCACCTACCCCGCAAATCA ATGGGACCAAACCGATGGACACGAGTTGCAGTATTAGGGTGAGCGACGTCAACACTAGAGGCGACCCATTGAAACAACTTCAAACCTCGCGAAGTTCGAA AGGAAAGGTGGTTCCAGACAACTCGGGAACAATGTCAAACTACATGTGTTCTCCGGAAAGACCATCCAACGATCTCATGAAACTTCCGACGTAG
AA sequence Show only first row Show all	>Lus10019635 pacid=23139185 polypeptide=Lus10019635 locus=Lus10019635.g ID=Lus10019635.BGIv1.0 annot-version=v1.0 MRWPNLSFSLNSFSARSASVTSPKPSSSCSGADEASPSPALHHKNNNRKHHGSPSLAPSHTFGFRLRSSSTGMPKLTRQKKLRHLTDRDVFSDEISYEPE LSRSKSASSSPRRSVTAPLPVPLPLPQPSNPGEADSRLRSPKEKDRDGSREKSNGDGIGISFSASAPSSVLGGRETKMTAEQHQETRSDRAAVGIDLNNF GVNNGARNSCNSPYASPEVSPQRLMYVFTTSPYINQIPGGIQAWSAPEMPTLDIPGLPPPACFDFIAHTSSDSSSPLHNNPMATNRSPRSPVTARTSFEI IPTGRRDNNSSGNVEVHKLPLPPGANLISPTSLSTPPLIPPVAAAKQEPVPMKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVDMFPDDPKCRECI KQLEQEIKVLSKLKHPNIVQYYGSEIIEDQFYIYLEYVHPGSINKYVREHCGAVTESIVRSFTRHILSGLAYLHTMKTVHRDIKGANLLVDASGVVKLAD FGTSKHLTGQAAELSLKGSPYWMAPELMQAVMQKDNNSDLALAVDIWSLGCTVIEMFTGKPPWSEYEGAAAMFRVIKDTPPVPETLSPDGKDFLSWCFKR NPAERPSACLLLEHRWLKQLPDAAAPPSPTPQINGTKPMDTSCSIRVSDVNTRGDPLKQLQTSRSSKGKVVPDNSGTMSNYMCSPERPSNDLMKLPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10019635 [exp]	0	1
AT2G36430			Plant protein of unknown funct...		Lus10035568 [exp]	1.0	0.9564
AT3G45040			phosphatidate cytidylyltransfe...		Lus10041335 [exp]	11.4	0.9188
AT1G74360			Leucine-rich repeat protein ki...		Lus10003478 [exp]	19.3	0.9196
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	21.3	0.9446
AT3G50910			unknown protein		Lus10028325 [exp]	26.1	0.9411
AT2G46620			P-loop containing nucleoside t...		Lus10008834 [exp]	28.3	0.9446
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10023607 [exp]	30.7	0.9070
AT4G37420			Domain of unknown function (DU...		Lus10013221 [exp]	32.3	0.9204
AT4G39720			VQ motif-containing protein (....		Lus10016814 [exp]	33.6	0.9228
AT4G02920			unknown protein		Lus10008160 [exp]	36.6	0.9426

Compare expression of checked genes

Lus10019635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.