Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29860 465 / 3e-164 EMB2757, TAN TANMEI, EMBRYO DEFECTIVE 2757, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 60 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 58 / 7e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 55 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 54 / 7e-08 RACK1B_AT receptor for activated C kinase 1B (.1) AT4G02730 53 / 1e-07 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 52 / 3e-07 RACK1C_AT receptor for activated C kinase 1C (.1) AT5G52820 52 / 4e-07 WD-40 repeat family protein / notchless protein, putative (.1) AT3G49660 51 / 7e-07 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18060 51 / 8e-07 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009335 [exp] 672 / 0 AT4G29860 473 / 3e-167 TANMEI, EMBRYO DEFECTIVE 2757, Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 62 / 3e-10 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 62 / 5e-10 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10018458 [exp] 58 / 1e-08 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 57 / 1e-08 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 56 / 2e-08 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 55 / 3e-08 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 53 / 1e-07 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10038960 [exp] 52 / 4e-07 AT3G18060 971 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G002100 [exp] 509 / 0 AT4G29860 523 / 0.0 TANMEI, EMBRYO DEFECTIVE 2757, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 63 / 2e-10 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 61 / 6e-10 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 57 / 6e-09 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 57 / 2e-08 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G148500 [exp] 54 / 5e-08 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G049200 [exp] 52 / 5e-07 AT3G18060 1018 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.015G041200 [exp] 51 / 7e-07 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 50 / 1e-06 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 50 / 2e-06 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10019636 pacid=23139221 polypeptide=Lus10019636 locus=Lus10019636.g ID=Lus10019636.BGIv1.0 annot-version=v1.0 ATGAGCAAGAGACCGCCGCCGCCGCCTGATCCCATCGCAGTCCTTAGAGGCCCCCGCGCCTCCGTCGCCGACGTTTGCTTCCATCCCTCTAAACCCATCT TGTTTACCGGCTCGTCAGACGGTGAATTGAGGATTTGGAGCACGGCCCAGCATCGAACACTGTCATCTTCATGGGCTCACAGTGCTGCTCATGGGATCCT AACTGTTGCTAGCAGCTCTGCACATGGAGATAACAAAGTCATCAGCCAGGGAAGGGATGGAACTGTGAAGTATTGGGATATTCAAGATGGTTCCCTCTCC AGGGCGCCCTCTGTCACAATCACGACTGGTGCATACCACTTCTGCAAAATGTCGCTAGTCGAAACGCCTTCCACTGGTGGAGCTAGCATTCGTTATGATC GACAAGAGAAGGAGAATGTGGATGTTTTCCGTGATGGTGAAGAAGAATCAGAGTGCTCTAATACTGCAAAAGAGAATGGTCATTGCAACGCATCAGAGTG TATTGCTGTAGCAGGGGAGTTGGGTTCGGAGGTTGAGGTATGGGATCTTAAAAATGCGGAGAGGATTGTACGGTTACCTGGAAACAACTCCAGTGGCTCT CCTAGTACTTCTGCCACCAAGAGAGGAATGTGCATGTCAGTTCAGGCATTTTTACCTTTGAGTTCACATGGATTCCTGAATATCATGGCAGGGTACGAGG ATGGTTCCATGCTTTTGTGGGATATGCGCAGACCTCGGGAACCTCTTACGTCTGTGAAGTATCACTCCGAGCCAGTTTTAAGCTTATCCGTTGACGGATT GTGCTCTGGAGGGATCTCTGGATCTGCTGATGATAAGATTATGTTATTCAGTTTGGACACATCCACGGGTTCTTGTGTTTTAAGGAAAGAGATCATCTTG GAGCGACCAGGCATATCCGGCACCTCAATTAGACCAGACCGGAAAATCTTCGCTACTGCTGGCTGGGACCACAGGATAAGGGTATACAACTACAGGAAAG AAAATGCATTGGCGATATTGAAGTATCACAAAGCCACTTGTAATGCTGTGGCATATTCGCCGGATTCGAAGCTTTTGGTCTCTGCTTCAGAAGACTCGAC GATTGCTCTGTGGGAACTGTATCCCCCATCAACCACCATGTAA
AA sequence Show only first row Show all	>Lus10019636 pacid=23139221 polypeptide=Lus10019636 locus=Lus10019636.g ID=Lus10019636.BGIv1.0 annot-version=v1.0 MSKRPPPPPDPIAVLRGPRASVADVCFHPSKPILFTGSSDGELRIWSTAQHRTLSSSWAHSAAHGILTVASSSAHGDNKVISQGRDGTVKYWDIQDGSLS RAPSVTITTGAYHFCKMSLVETPSTGGASIRYDRQEKENVDVFRDGEEESECSNTAKENGHCNASECIAVAGELGSEVEVWDLKNAERIVRLPGNNSSGS PSTSATKRGMCMSVQAFLPLSSHGFLNIMAGYEDGSMLLWDMRRPREPLTSVKYHSEPVLSLSVDGLCSGGISGSADDKIMLFSLDTSTGSCVLRKEIIL ERPGISGTSIRPDRKIFATAGWDHRIRVYNYRKENALAILKYHKATCNAVAYSPDSKLLVSASEDSTIALWELYPPSTTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Lus10019636 [exp]	0	1
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10033644 [exp]	9.7	0.8013
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	16.2	0.7931
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	20.2	0.7874
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10043187 [exp]	23.0	0.7568
AT4G26240			unknown protein		Lus10012919 [exp]	28.9	0.7642
AT2G27285			Coiled-coil domain-containing ...		Lus10038787 [exp]	32.8	0.7869
AT5G19430			RING/U-box superfamily protein...		Lus10009695 [exp]	40.6	0.7711
AT1G67170			unknown protein		Lus10019966 [exp]	55.5	0.7857
AT3G27310		PUX1	plant UBX domain-containing pr...		Lus10032080 [exp]	76.5	0.7691
AT5G19490	CCAAT		Histone superfamily protein (....		Lus10026780 [exp]	76.8	0.7504

Compare expression of checked genes

Lus10019636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.