Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12260 58 / 1e-09 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT5G62380 56 / 5e-09 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT1G71930 56 / 7e-09 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT2G18060 54 / 2e-08 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT4G36160 53 / 4e-08 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT1G62700 53 / 6e-08 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) AT1G79580 52 / 7e-08 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT2G46770 52 / 1e-07 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G32770 52 / 1e-07 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) AT1G54330 51 / 2e-07 NAC ANAC020 NAC domain containing protein 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035400 [exp] 275 / 5e-94 AT1G79580 61 / 1e-10 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10014342 [exp] 179 / 1e-56 AT3G10490 51 / 5e-08 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10033652 [exp] 113 / 4e-30 AT1G62700 54 / 2e-08 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) Lus10033650 [exp] 86 / 6e-21 AT3G03200 50 / 8e-08 NAC domain containing protein 45 (.1) Lus10033676 [exp] 78 / 3e-16 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10024006 [exp] 72 / 3e-14 AT1G79580 75 / 3e-14 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10010294 [exp] 66 / 2e-12 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10025078 [exp] 64 / 2e-11 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10017915 [exp] 62 / 5e-11 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G028700 [exp] 73 / 6e-15 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.019G063000 [exp] 71 / 7e-15 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.016G027900 [exp] 66 / 2e-12 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G231300 [exp] 64 / 7e-12 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.014G163600 [exp] 63 / 2e-11 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.017G058100 [exp] 62 / 3e-11 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.013G113100 [exp] 61 / 1e-10 AT1G71930 309 / 1e-104 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G029200 [exp] 59 / 3e-10 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.005G116800 [exp] 58 / 9e-10 AT2G18060 441 / 2e-155 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.019G083600 [exp] 57 / 2e-09 AT1G71930 320 / 4e-109 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10019638 pacid=23139211 polypeptide=Lus10019638 locus=Lus10019638.g ID=Lus10019638.BGIv1.0 annot-version=v1.0 ATGGACGATGAAGCGCACGCAGCTTTGCAGGAGAGAAGGAGGGCCTATGTCGCATCCTTAAACCTGGGTTCCGGATTCGTATTCCGCCCCACCGAGAAGC AACTAATCTGCAAATTCCTGATCGGCAAGATCAGACGAGGAGACGCCGTCCGGGAAGATGACCTGATCAAGGACCTCGACGTTTACTCTATGGAGCCGTG GGATATCTGGAATGGGTTCTCACAGGATGAGTTGTCCGATCTATACTTCTACACCAAACTGAAGCGGAAGCCGTCGAACAACAAGATCGATCGCGGAGTT GCTGGAGGGAAAGGTCGGTGGCAAGGGGAGACGTCTAAATCGAAGATCCAAGTTAATTTAATGAAGAACCGAGGGTTGCAGGAAGAGTTGACTTGTATCA TGAATTTTGTGATCAGGAAGTTCAGGTACAGGAACGCTGAGAACGCGGAGCAGGACGGTCATTGGATCATGACTGAGTACAGGGAGAATCGCGCTGGAGC CGTTGATTGGGTGATATTCCATCTCCGTAGAGATGGAAACTCGTTAGCATCGTCATCACCAAGCGGATCTCCAACAACATCAGAGAGTGGCGATAGTACT TGTACCGATGATGAAGATGATGATAATGATGAAGATGATCCGAAACGTCCGAAGATTTCTGATACCTGGCAGAGCAGAAAATCCCAATCGAAGTACGAAT GTTCGTACTAG
AA sequence Show only first row Show all	>Lus10019638 pacid=23139211 polypeptide=Lus10019638 locus=Lus10019638.g ID=Lus10019638.BGIv1.0 annot-version=v1.0 MDDEAHAALQERRRAYVASLNLGSGFVFRPTEKQLICKFLIGKIRRGDAVREDDLIKDLDVYSMEPWDIWNGFSQDELSDLYFYTKLKRKPSNNKIDRGV AGGKGRWQGETSKSKIQVNLMKNRGLQEELTCIMNFVIRKFRYRNAENAEQDGHWIMTEYRENRAGAVDWVIFHLRRDGNSLASSSPSGSPTTSESGDST CTDDEDDDNDEDDPKRPKISDTWQSRKSQSKYECSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10019638 [exp]	0	1
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10038693 [exp]	3.5	0.8258
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10006515 [exp]	3.9	0.8260
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030140 [exp]	4.0	0.7896
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10018168 [exp]	4.9	0.8156
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	5.0	0.8420
AT2G37975			Yos1-like protein (.1)		Lus10017192 [exp]	10.1	0.7716
AT5G51740			Peptidase family M48 family pr...		Lus10015019 [exp]	10.7	0.7818
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Lus10040621 [exp]	12.0	0.7813
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10012327 [exp]	12.3	0.8365
AT3G19630			Radical SAM superfamily protei...		Lus10020989 [exp]	16.5	0.7970

Compare expression of checked genes

Lus10019638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.