Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19080 218 / 2e-66 SWIB complex BAF60b domain-containing protein (.1) AT1G49520 176 / 1e-51 SWIB complex BAF60b domain-containing protein (.1) AT4G22360 151 / 5e-42 SWIB complex BAF60b domain-containing protein (.1) AT2G35605 87 / 1e-20 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 83 / 4e-19 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 74 / 1e-15 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 73 / 2e-15 SWIB/MDM2 domain superfamily protein (.1) AT1G31760 72 / 3e-15 SWIB/MDM2 domain superfamily protein (.1) AT4G26810 56 / 1e-09 SWIB/MDM2 domain superfamily protein (.1.2) AT3G48600 50 / 6e-07 SWIB complex BAF60b domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009333 [exp] 343 / 4e-117 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10016581 [exp] 96 / 2e-21 AT4G22360 190 / 1e-55 SWIB complex BAF60b domain-containing protein (.1) Lus10014892 [exp] 96 / 2e-21 AT4G22360 243 / 2e-76 SWIB complex BAF60b domain-containing protein (.1) Lus10005667 [exp] 68 / 1e-13 AT3G03590 118 / 4e-35 SWIB/MDM2 domain superfamily protein (.1) Lus10013893 [exp] 65 / 1e-12 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 59 / 6e-11 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10038799 [exp] 50 / 8e-07 AT4G26810 160 / 1e-50 SWIB/MDM2 domain superfamily protein (.1.2) Lus10033312 [exp] 46 / 3e-06 AT2G35605 68 / 6e-16 SWIB/MDM2 domain superfamily protein (.1) Lus10034774 [exp] 46 / 3e-06 AT2G35605 68 / 6e-16 SWIB/MDM2 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G134500 [exp] 287 / 7e-95 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.009G106700 [exp] 174 / 2e-50 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.004G145200 [exp] 171 / 2e-49 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.007G039350 [exp] 143 / 2e-41 AT3G19080 118 / 4e-32 SWIB complex BAF60b domain-containing protein (.1) Potri.006G010700 [exp] 134 / 9e-36 AT4G22360 303 / 2e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.016G013400 [exp] 132 / 5e-35 AT4G22360 301 / 1e-99 SWIB complex BAF60b domain-containing protein (.1) Potri.013G070600 [exp] 80 / 7e-18 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1) Potri.001G297400 [exp] 74 / 9e-16 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 72 / 4e-15 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.015G137600 [exp] 50 / 1e-07 AT4G26810 181 / 1e-60 SWIB/MDM2 domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08766 [flax] [poplar] DEK_C DEK C terminal domain PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Lus10019640 pacid=23139201 polypeptide=Lus10019640 locus=Lus10019640.g ID=Lus10019640.BGIv1.0 annot-version=v1.0 ATGGTGTCGGACTCGGAGCTCATTGAAAGGCTGCGGGAGTTCCTCAAGACATCGGACCTCGAGACGACGACCACCACCATCGTCCGGCGGAAGCTGGAGG AGGATTTCGGTGTCGATTTGTCCGATAAGAAGGCCTTCATCCGGGAACAGGTCGACTTGTTTCTCCAATCGCAGCTCGAGGAAGTGGCCGAAGGCGGCGG CGGCTGCGATGATCGGAAGTCGGAAGGCGGCGATGAGGTGGAGGAGGAAGAGGAAGAGGCCGATGAGGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAA GGAGCTCGGCGATCGAGTAGACGGAAGCCTCGAGCGAAAGGCAGGTCTAAAAAGCCAGCTGAAGAAGGAAAAAAGAGAGGGGGAGGGGGCGGGTTTACCA AAATATGTGGACTTTCCCCTCAACTGCAGGAGTTTCTTGGTGCTCCTGAAATGGCCAGAACAGAAGTAAGCTACAAAGCAGATTGCCTTCCAGTATTTCC ATCAAAAGTTGGTATCATTGAGTCTAAAAAGCCAGCTGAAGAAGGAAAAAAGAGAGGGGGAGGGGGCGGGTTTACCAAAATATGTGGACTTTCCCCTCAA CTGCAGGAGTTTCTTGGTGCTCCTGAAATGGCCAGAACAGAAGTGGTAAAGAGAATATGGTCTTACATTAGAGAGAAAGATTTGCAAGAGCCCAGCAATA GGAGAAACATACTCTGTGACGAACCTTTGCGCGCCCTTTTCCATGTGGACTCAATCAACATGTTTCAAATGAATAAAGCCCTTGCTAAGCATATATGGCC ACTGGATTCAGATGACGTTCTTCCGGCCAAGCCAGCACCAAAGGAGAAGCAAAAGAAGCAAGAGAGAGATGAAGAACCTGATGATTCTGGAAGGAAAGAG AAGCGGCAGAAAGGAGGAACTTCAGGATTTATGGCCCCTCTTCCGCTTTCAGAGCCCCTTGTAAAGTTCCTAGGCACTGGTGAAAGTGCATTGTCTAGAG CTGAGGTTGTCAAAAGAATGTGGGACTACATTAAGCAGAATAACCTCCAGGATCCATCCGATAAGAGGCAAGTGATATGCGATGAGAAGCTAAAAGAACT GTTTGATCTCGACACCTTCACGGGGTTCACGGTATCGAAACTTCTATCTGCTCATTTCGTGAAGACTTGA
AA sequence Show only first row Show all	>Lus10019640 pacid=23139201 polypeptide=Lus10019640 locus=Lus10019640.g ID=Lus10019640.BGIv1.0 annot-version=v1.0 MVSDSELIERLREFLKTSDLETTTTTIVRRKLEEDFGVDLSDKKAFIREQVDLFLQSQLEEVAEGGGGCDDRKSEGGDEVEEEEEEADEEEEEEEEEEEE GARRSSRRKPRAKGRSKKPAEEGKKRGGGGGFTKICGLSPQLQEFLGAPEMARTEVSYKADCLPVFPSKVGIIESKKPAEEGKKRGGGGGFTKICGLSPQ LQEFLGAPEMARTEVVKRIWSYIREKDLQEPSNRRNILCDEPLRALFHVDSINMFQMNKALAKHIWPLDSDDVLPAKPAPKEKQKKQERDEEPDDSGRKE KRQKGGTSGFMAPLPLSEPLVKFLGTGESALSRAEVVKRMWDYIKQNNLQDPSDKRQVICDEKLKELFDLDTFTGFTVSKLLSAHFVKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19080			SWIB complex BAF60b domain-con...		Lus10019640 [exp]	0	1
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10010963 [exp]	6.7	0.8099
AT2G38000			chaperone protein dnaJ-related...		Lus10021120 [exp]	8.3	0.7836
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	8.8	0.8482
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10016596 [exp]	9.2	0.8489
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10027259 [exp]	18.0	0.8191
AT3G44850			Protein kinase superfamily pro...		Lus10005363 [exp]	18.9	0.7852
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	22.0	0.8298
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10019982 [exp]	22.5	0.8199
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	23.7	0.8263
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10028172 [exp]	26.8	0.7464

Compare expression of checked genes

Lus10019640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.