Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66930 317 / 4e-110 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000838 [exp] 392 / 4e-140 AT5G66930 360 / 4e-128 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G037800 [exp] 322 / 2e-112 AT5G66930 335 / 4e-118 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0651 [flax] [poplar] Mad2 PF07855 [flax] [poplar] ATG101 Autophagy-related protein 101
Representative CDS sequence Show only first row Show all	>Lus10019643 pacid=23139234 polypeptide=Lus10019643 locus=Lus10019643.g ID=Lus10019643.BGIv1.0 annot-version=v1.0 ATGAACTGCGAAGTCTGCCAACTCAAAGAGCTGGAAGTGGAGCATTTCGAGATACGGGAAGTTCTTCGCTGCATATTGCATACGGTTGTGTTCCATCGAG CTTTGGGGCTCGTTCGGCCGAAAGTCATTGACTTGGAGCTCTTTGACATTACATATGTGCAATGTGGAGATGTTGAGCTAGAAAAGAAAATCGACGAGAA GATTGAGCAGTTCATTAGTTGGGTGGAGAAACGCCCGAATAAGAAGAGCCAGGTTTGCATATCCTTCTACGAGGTGAAAAACAAGCACCCTTCATGGTTC ACGAACAAGACGGAACGTCTTTACTGGGAACAATGGTATATCAACCTGAATGTAAGCCAACAACCAAAAGCATACCTTGGAAAGTCGCATCATTCGAAGA TAGTAGTGGATCCCGGAGAAACTTCGTTGGACGAGAGGAGTGCTCGCAGGGCAGCGCTAGAGTCGTCTCTTCGCGAGGTCTTGTTCCAAATAATAAAGTT TGTGAACGAGAAGAAGGATCACGTCCCTCCAATATCGGATGGTGTCTCATGCTTCCCTTATGAAATCACCATTCCCAGGTGGGTTCTCATTCCTCAGTAC TTCAATATAATCAATCTTTGTAAACATGGTATAGAGAAGCTTGTTGTTGCGGCTCTTTCTGACTCAGCTGTATCCTGCCGTTTTGAACAGCTCGTCGGAT TCTGCATTTGGGATGGACATGATCAAGAGAATGCTCCACACCGGTCAGCCAAACATGCTCAGCTGATTCTTGAAGTGATTCAACCAGCCTGA
AA sequence Show only first row Show all	>Lus10019643 pacid=23139234 polypeptide=Lus10019643 locus=Lus10019643.g ID=Lus10019643.BGIv1.0 annot-version=v1.0 MNCEVCQLKELEVEHFEIREVLRCILHTVVFHRALGLVRPKVIDLELFDITYVQCGDVELEKKIDEKIEQFISWVEKRPNKKSQVCISFYEVKNKHPSWF TNKTERLYWEQWYINLNVSQQPKAYLGKSHHSKIVVDPGETSLDERSARRAALESSLREVLFQIIKFVNEKKDHVPPISDGVSCFPYEITIPRWVLIPQY FNIINLCKHGIEKLVVAALSDSAVSCRFEQLVGFCIWDGHDQENAPHRSAKHAQLILEVIQPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66930			unknown protein		Lus10019643 [exp]	0	1
					Lus10006006 [exp]	2.4	0.9544
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	2.8	0.9528
AT2G24550			unknown protein		Lus10026939 [exp]	4.0	0.9547
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025093 [exp]	4.0	0.9476
AT3G56680			Single-stranded nucleic acid b...		Lus10027292 [exp]	4.2	0.9500
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	4.5	0.9557
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	5.2	0.9380
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	5.9	0.9509
AT1G05840			Eukaryotic aspartyl protease f...		Lus10021485 [exp]	6.2	0.9480
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10002740 [exp]	7.3	0.9298

Compare expression of checked genes

Lus10019643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.