Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64030 923 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 861 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 845 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 810 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G40280 600 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 587 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 538 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 481 / 6e-162 Putative methyltransferase family protein (.1) AT2G39750 478 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 477 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020894 [exp] 1009 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033481 [exp] 922 / 0 AT5G64030 924 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10000839 [exp] 915 / 0 AT5G64030 710 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042767 [exp] 898 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 893 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 869 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 861 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028354 [exp] 800 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 790 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G104000 [exp] 960 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 954 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 897 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 894 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 848 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 816 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 614 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 545 / 0 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 483 / 1e-162 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 474 / 2e-159 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10019644 pacid=23139219 polypeptide=Lus10019644 locus=Lus10019644.g ID=Lus10019644.BGIv1.0 annot-version=v1.0 ATGCGTAGTACTGAGTCACGAAGCTACTCCTCCACAGTGACCTTTCTGGTGTTTGTTGCTCTATCTTCGTTTGGACTCTGGGTAATGGTCTCTTCATTCA TTGCTCCTCTTCAATACCTGGGCATCCCAGCCAACAGGAATGAAGTGACATCAGACAAAGTGATCGACACCGGTAGTCACAAACGGAATGATTTCGACGT GTCGAAGAAACCAGAAGAGATATCTCGAAAAACCCGTGATTTTGCAGCGAGCAATAGTACGACACCAGTTGATAAACAATCCCCCTTGGGGGCTCAGGCA GAGCTTATGAATGAAACGTCCACCGAGAACGGGTCATGGTCAACGCAGGCAGCAGAATCGAGGAACGAGAAGGAAACTCGACAAGAGGAACAGCAGAAAA TTGGTGTATTCCACGACTGGAAGTTGTGCAATGTCACAGCTGGACCGGATTTCATTCCGTGTCTCGACAATTGGAAAGCTATTTCGAGTCTTAGCTCTAC AAAACACTATGAACATCGAGAGAGGCATTGTCCAGAGGAGTCTCCAACTTGCCTTGTTCCACTTCCGGAAGGCTATAAACGCCCGATTCAGTGGCCTGTT AGTAGGCAAAAGATTTGGTACTCTAACGTACCCCATACGAAGCTTGTCGACTTCAAAATGCGTCAAAACTGGGTGAAAGTTGATGGTCAGTACCTTACTT TCCCTGGTGGTGGAACTCAGTTCAAGCATGGCGCTCTTCACTATATCGACTTTATAAACGAGAATGTACCTGGTATTGAATGGGGGAAACGGAGCCGTGT GGTATTGGATGTTGGATGTGGTGTTGCTAGTTTCGGAGGTTTCCTCTTCGAAAGAGATGTCCTGACAATGTCATTTGCCCCTAAAGATGAGCATGAAGCC CAAGTCCAGTTTGCTCTCGAGAGAGGAATCCCTGCTATCTCTGCTGTTATGGGTACAACGAGACTCCCTTTTCCAGCCATAGTCTTTGATGTTGTCCACT GTGCACGTTGTAGGGTGCCATGGCATATCGAAGACGGTAAACTTCTTATGGAGTTGAATCGGGTGCTAAGGCCAGGAGGGTACTTCGTATGGTCCGCTAC TCCAGCTTACAGAAAGCATCCTGAAGATAAAGAAATATGGAGAGCCATGAACCGTTTATTGGACTCAATGTGTTGGGAACTTGTAGCAAGAGTTAGGGAT AGGCTTAATGGAGTCGGTATAGCGATATACAGGAAACCAATGAATAACACATGCTATGAAAAAGACAATAAATCAGAGCAACACCCTCCATTTTGTGAAG CATCAACTGATGATCCTAATGCAGCCTGGAATGTACCTCTGCAAACATGCATACATAAGGTCCCAGTAGATTCTTTGGAACGTGGGTATCAATGGCCAGA GCTATGGCCAGCTAGGCTGGAGAAGATCCCTTACTGGATGTTAGGTGGAGTTTATGGCAAACCTCAGCCGGAAGACTTTGCTGCAGATTATGAGCACTGG AAGAGAGTTGTGTCCAAGTCGTATAGTAATGGGATTGGAATCAACTGGGCAGCTGTGAGGAATGCCATGGACATGCGAGCTATCTACGGAGGGTTTGCAG CAGCTTTAAAGGATGTGAACATCTGGGTGATGAATGTAGTCCCAATCAGCTCTCCTGATGTTCTCCCTGCAATCTATGAACGTGGCCTCTTAGGCATATA CCATGATTGGTGCCAATCATTTAGCACCTACCCTAGATCGTATGATCTTGTACATGCTGATCACCTTTTCTCAAACATCAAGCAAAAGTGCAACATAGTT CCTCTAGTTGTCGAGGTCGATCGAATCCTGAGACCGGAAGGGCAACTTATCGTCCGTGACAATGCCGAGACTATAAGTGAGGTTGAGAGTCTCTTGAGAT CGATGCAGTGGGAGATTCGTATGGCGTATAAAAAGGACGGTGAAGGGTTGCTGTCAGCCCGGAAGACTATGTGGCGGCCCAAGGTATTCGAAACGCTATA TTACGGTATTGTGAAATGA
AA sequence Show only first row Show all	>Lus10019644 pacid=23139219 polypeptide=Lus10019644 locus=Lus10019644.g ID=Lus10019644.BGIv1.0 annot-version=v1.0 MRSTESRSYSSTVTFLVFVALSSFGLWVMVSSFIAPLQYLGIPANRNEVTSDKVIDTGSHKRNDFDVSKKPEEISRKTRDFAASNSTTPVDKQSPLGAQA ELMNETSTENGSWSTQAAESRNEKETRQEEQQKIGVFHDWKLCNVTAGPDFIPCLDNWKAISSLSSTKHYEHRERHCPEESPTCLVPLPEGYKRPIQWPV SRQKIWYSNVPHTKLVDFKMRQNWVKVDGQYLTFPGGGTQFKHGALHYIDFINENVPGIEWGKRSRVVLDVGCGVASFGGFLFERDVLTMSFAPKDEHEA QVQFALERGIPAISAVMGTTRLPFPAIVFDVVHCARCRVPWHIEDGKLLMELNRVLRPGGYFVWSATPAYRKHPEDKEIWRAMNRLLDSMCWELVARVRD RLNGVGIAIYRKPMNNTCYEKDNKSEQHPPFCEASTDDPNAAWNVPLQTCIHKVPVDSLERGYQWPELWPARLEKIPYWMLGGVYGKPQPEDFAADYEHW KRVVSKSYSNGIGINWAAVRNAMDMRAIYGGFAAALKDVNIWVMNVVPISSPDVLPAIYERGLLGIYHDWCQSFSTYPRSYDLVHADHLFSNIKQKCNIV PLVVEVDRILRPEGQLIVRDNAETISEVESLLRSMQWEIRMAYKKDGEGLLSARKTMWRPKVFETLYYGIVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10019644 [exp]	0	1
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10002325 [exp]	13.0	0.8501
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10036983 [exp]	26.5	0.8432
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	29.4	0.8441
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10012719 [exp]	41.0	0.7995
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10042967 [exp]	45.6	0.8303
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	53.6	0.8304
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10017724 [exp]	57.4	0.8242
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Lus10041354 [exp]	60.1	0.8223
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10018436 [exp]	66.8	0.8044
AT4G02110			transcription coactivators (.1...		Lus10002432 [exp]	94.9	0.7443

Compare expression of checked genes

Lus10019644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.