Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23600 137 / 4e-41 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23620 134 / 8e-40 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23590 132 / 4e-39 ATMES8 methyl esterase 8 (.1) AT2G23610 131 / 5e-39 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT3G50440 129 / 1e-37 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23560 125 / 2e-36 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT4G37140 116 / 2e-34 ATMES20, MEE69 MATERNAL EFFECT EMBRYO ARREST 69, ARABIDOPSIS THALIANA METHYL ESTERASE 20, alpha/beta-Hydrolases superfamily protein (.1) AT3G29770 117 / 2e-32 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT2G23580 112 / 5e-32 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT5G10300 113 / 8e-32 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023326 [exp] 166 / 2e-52 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10000840 [exp] 142 / 1e-45 AT2G23560 88 / 6e-23 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Lus10012854 [exp] 144 / 2e-45 AT2G23600 147 / 2e-45 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 124 / 3e-36 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10005400 [exp] 120 / 1e-34 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10015532 [exp] 120 / 2e-34 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10030707 [exp] 120 / 2e-33 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10013193 [exp] 117 / 2e-32 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10038592 [exp] 115 / 2e-32 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036800 [exp] 134 / 2e-39 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.007G036700 [exp] 132 / 3e-39 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.005G133700 [exp] 130 / 2e-38 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037033 [exp] 130 / 2e-38 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037200 [exp] 130 / 2e-38 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037100 [exp] 129 / 2e-38 AT2G23620 235 / 1e-77 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133600 [exp] 128 / 1e-37 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037000 [exp] 128 / 1e-37 AT2G23620 236 / 7e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.011G082400 [exp] 126 / 3e-37 AT2G23590 254 / 4e-85 methyl esterase 8 (.1) Potri.005G133800 [exp] 127 / 4e-37 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10019645 pacid=23139294 polypeptide=Lus10019645 locus=Lus10019645.g ID=Lus10019645.BGIv1.0 annot-version=v1.0 ATGAAGAAACAACACTTTGTACTAGTTCATGGAACAAACCATGGAGCCTGGTGCTGGTACAAGGTCATGGCCCGGCTCGAATCAGCCGGGCACATCGTTA CAGCGTTGGACCTGGGAGGAAGTGGAGTCAACTTTGACCGAGTTTTGTCCATCTTTAACTATGTCAACCCACTGGTTCAGTTCATGGCCGACCTTCCTGA AGAAGAAAGAGTCATCCTTGTGGGTCATAGCTATGGCGGAATTTTGATTTCATTGGCCATGGAGAAGTTCCCTAGTAAGGTTCTTGTTGCTGTTTTTGTT GCAGCATTCATGCCTAGCTTCACTTCGCATTCTCTTGCTATCGTCACTCCAATCCCTTGCCCCCCTGTTTTGGCATAG
AA sequence Show only first row Show all	>Lus10019645 pacid=23139294 polypeptide=Lus10019645 locus=Lus10019645.g ID=Lus10019645.BGIv1.0 annot-version=v1.0 MKKQHFVLVHGTNHGAWCWYKVMARLESAGHIVTALDLGGSGVNFDRVLSIFNYVNPLVQFMADLPEEERVILVGHSYGGILISLAMEKFPSKVLVAVFV AAFMPSFTSHSLAIVTPIPCPPVLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10019645 [exp]	0	1
AT3G19940			Major facilitator superfamily ...		Lus10028729 [exp]	3.2	0.8372
AT3G25280			Major facilitator superfamily ...		Lus10025881 [exp]	4.2	0.7806
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037665 [exp]	18.4	0.8081
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042012 [exp]	19.2	0.7639
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	22.3	0.7523
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10028014 [exp]	24.3	0.6033
AT2G38600			HAD superfamily, subfamily III...		Lus10021380 [exp]	65.1	0.7133
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001009 [exp]	66.6	0.6764
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	78.2	0.7092
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Lus10041259 [exp]	115.2	0.5798

Compare expression of checked genes

Lus10019645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.