Plant FIBer expression Database

Lus10019646 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50410 49 / 2e-07 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000844
[exp]
81 / 2e-18 AT3G07320 135 / 5e-35 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G036400
[exp]
52 / 2e-08 AT3G50410 170 / 2e-52 OBF binding protein 1 (.1)
Potri.005G131600
[exp]
42 / 7e-05 AT3G50410 126 / 3e-35 OBF binding protein 1 (.1)
PFAM info
Representative CDS sequence
>Lus10019646 pacid=23139313 polypeptide=Lus10019646 locus=Lus10019646.g ID=Lus10019646.BGIv1.0 annot-version=v1.0
ATGAAGGCAGGGCCGACGCAGCACGGCGGCGGCGGCTGTGTCGGCGATGAGCAGGTGGAGAAGGCGAGTAATTTCTTCTGGGCTTTGGGTGGGCCATTGG
GACTTGGGCTAGAATCAAAGGGGAATGGTGGGCTAGGGACGCTTTGCGGGAACTTCACCTCTCTGCTGAGTAACCATGGGCCTGGGTTTGCTGGTAACGG
GTTCGGGCCTGGGTACGACGATATCGGGTTTGGTTTGGGCAGAGGCATTTGGCCGTTTCAAGGAGTGGAGCACGGCGGGGGGGGGGGGGGGTGGCGGCTG
AGGACGGGGGTGGCCGGAACCGGAGGAGGAGACAGTAACGCGTGGCAGTTCGACACAGGAGGAGAGGGATTCGGTGTTGGTGGTGGTGCCGGCGGCGGTG
GCGGAGGTGATTGCCTCTCCTGGCCTGATTTGGCGATTTCAACTCTTGGGAATGGACTCAAGTAA
AA sequence
>Lus10019646 pacid=23139313 polypeptide=Lus10019646 locus=Lus10019646.g ID=Lus10019646.BGIv1.0 annot-version=v1.0
MKAGPTQHGGGGCVGDEQVEKASNFFWALGGPLGLGLESKGNGGLGTLCGNFTSLLSNHGPGFAGNGFGPGYDDIGFGLGRGIWPFQGVEHGGGGGGWRL
RTGVAGTGGGDSNAWQFDTGGEGFGVGGGAGGGGGGDCLSWPDLAISTLGNGLK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G50410 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1) Lus10019646
[exp]
0 1
AT3G07320 O-Glycosyl hydrolases family 1... Lus10000844
[exp]
2.4 0.9177
AT1G19850 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic ac... Lus10012421
[exp]
16.7 0.7936
AT3G60670 PLATZ transcription factor fam... Lus10009283
[exp]
20.7 0.8645
AT5G48090 ELP1 EDM2-like protein1 (.1.2) Lus10002268
[exp]
34.5 0.8474
AT1G32190 alpha/beta-Hydrolases superfam... Lus10040096
[exp]
35.7 0.7744
Lus10000191
[exp]
38.2 0.8436
AT1G68480 C2H2ZnF JAG JAGGED, C2H2 and C2HC zinc fin... Lus10041443
[exp]
46.9 0.8417
AT1G21740 Protein of unknown function (D... Lus10024007
[exp]
52.2 0.8386
AT3G22810 Plant protein of unknown funct... Lus10014703
[exp]
53.8 0.8376
AT3G55930 Pre-mRNA-splicing factor 3 (.1... Lus10031931
[exp]
72.2 0.8305

Lus10019646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.