Gene [FLAX] | FIBexDB

Lus10019649 [FLAX]

External link

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT1G23280	262 / 6e-87			MAK16 protein-related (.1)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10019648 [exp]	263 / 4e-88	AT1G23280	285 / 4e-97	MAK16 protein-related (.1)
Lus10000846 [exp]	246 / 3e-81	AT1G23280	273 / 4e-92	MAK16 protein-related (.1)

Poplar homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.015G083700 [exp]	287 / 8e-97	AT1G23280	296 / 3e-100	MAK16 protein-related (.1)
Potri.012G085300 [exp]	286 / 3e-96	AT1G23280	298 / 7e-101	MAK16 protein-related (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF04874 [flax] [poplar]	Mak16	Mak16 protein C-terminal region

Representative CDS sequence

Show only first row Show all

>Lus10019649 pacid=23139315 polypeptide=Lus10019649 locus=Lus10019649.g ID=Lus10019649.BGIv1.0 annot-version=v1.0

ATGCAGCACGACGAGGTCATATGGCAAGCCATCAGACACAACCACTGCAGTTTCATGGCCAAAATCACGACCGGCAACTTCTGTACAAACCCGTACAATG

TCACCGGAATCTGCAATCGGAGCTCCTGCCCTCTCGCCAACAGTCGATACGCCACCATCCGCGAACACGAGGGTGTGTTCTATCTGTACATGAAAACGAT

AGAGAGAGCTCACAAGCCTAACCAGTTATGGGAAAGATTGAAGTTGCCTCGGAACTACGAGAAGGCGATTGAACTCATTAACAAGCATATGATGTACTGG

CCAAAGTTGCTTGTTCACAAGACAAAGCAGAGGCTGACTAAGATGACTCAGATGCGCATTCGTATGCACACGTTAGCTCGTAAGACGAGGGAGAGGGTGA

TGACAATTCCTAGAAAAGAGATTAAGAGGGAGGCAAGAAGGGAGGAAAAGGCAGAAAAAGCTGCAGTTTTGGACAAGAGTATTGAAAGAGAGTTGTTGAC

ACGGCTGATGACAGGACTGTATCCACATCATAACAACAGCAAGGTTCCTGACTTAGAAGTAGAGGAGGAAGAAGAGACTACTATTGAAACACAACTGGAT

GAGCAGGAGTACCTCAAGGTTATTGACTCAGACGAGGAAGAAGAAGAGGATCCTGAGATCGAATACGTTGAAGGTTATGATGAATTGGAAAAGGAAGATA

ACATTGAAGATTTTGACAATATTACAGTTAGATTTTACCAGGATCATGAAGGATTTCGAGGTCCTTGTTATATATTCTTAGCTCTTGACATCAAAGTTTG

TGATGCAGATGATGAGACGATGAAAAGGAGACTCGTAGATTCCGATCATCATGAAAAGGTTGATGCTAAGTCGAAGAAAACACGTGTGATGGTCGAGGTT

AGTATCGACGAATAG

AA sequence

Show only first row Show all

>Lus10019649 pacid=23139315 polypeptide=Lus10019649 locus=Lus10019649.g ID=Lus10019649.BGIv1.0 annot-version=v1.0

MQHDEVIWQAIRHNHCSFMAKITTGNFCTNPYNVTGICNRSSCPLANSRYATIREHEGVFYLYMKTIERAHKPNQLWERLKLPRNYEKAIELINKHMMYW

PKLLVHKTKQRLTKMTQMRIRMHTLARKTRERVMTIPRKEIKREARREEKAEKAAVLDKSIERELLTRLMTGLYPHHNNSKVPDLEVEEEEETTIETQLD

EQEYLKVIDSDEEEEEDPEIEYVEGYDELEKEDNIEDFDNITVRFYQDHEGFRGPCYIFLALDIKVCDADDETMKRRLVDSDHHEKVDAKSKKTRVMVEV

SIDE

DESeq2's median of ratios [FLAX]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23280			MAK16 protein-related (.1)		Lus10019649 [exp]	0	1

Lus10019649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.