Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37100 1137 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 1120 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G66950 1053 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G51920 286 / 4e-86 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 212 / 5e-59 unknown protein AT1G16540 71 / 2e-12 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000751 [exp] 1683 / 0 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 1335 / 0 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016776 [exp] 1334 / 0 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 262 / 1e-76 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 258 / 3e-75 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006342 [exp] 251 / 6e-72 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 217 / 1e-59 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022447 [exp] 81 / 3e-16 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016752 [exp] 82 / 4e-16 AT2G23520 96 / 5e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036100 [exp] 1340 / 0 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 1320 / 0 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G137900 [exp] 297 / 3e-89 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G120500 [exp] 279 / 1e-82 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 279 / 2e-82 AT4G22980 431 / 2e-144 unknown protein Potri.015G097000 [exp] 82 / 1e-16 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 81 / 5e-16 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G172100 [exp] 76 / 4e-14 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G066400 [exp] 70 / 5e-12 AT1G16540 1071 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Potri.001G056400 [exp] 45 / 5e-05 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019650 pacid=23139304 polypeptide=Lus10019650 locus=Lus10019650.g ID=Lus10019650.BGIv1.0 annot-version=v1.0 ATGCATCTTTCGCTGTGGAAGCCGATTTCACACTGTGCAGCTCTATTATTAGACAAGAGGAGCAGGAGGAAACATGGCGCAGAAGAGGAATCCGATCTGG AAATCAGTAAAAATCCGTCACTTCTCCGGAAAATCCAAGAGAACAAGCTTAGAGAAGCTTTGGAGGAAGCTTCAGAAGATGGATCACTGTCCAAATCGAA AGACATTGATGAATCAGAGTTCGCAAACTACCAAGAGGAAGAAACCCTAGGTCGGTCGAGGTCCTTGGCGAGGCTTCACGCCCAGAGAGAGTTCCTCAGG GCTACATCAATGGCTGCAGATCGAGTATTCGAGAGCTCGGAATCGATCCCCGAGCTGAACGAATCGTTCTCCAAGTTCTTAACCATGTACCCCAAGTATG AGTCTTCTGAGAAAGTTGATCAGTTGAGATCAGATGAGTACAGTCATCTGTCTCCTCCCAAGGTATGTCTCGATTACTGCGGGTTCGGGTTGTTCTCTTA TCTTCAGACATTACATTACTGGGAAACCTCTACTTTTAGCTTATCCGAGATCACTGCGAATTTCAGCAATCATGCTCTCTATGGTGGTGCTGAAAAGGGC ACATTGGAACATGATATCAAGACTAGGATAATGGATTACTTGAACATACCTGAGAATGAGTATGGACTTGTGTTTACTGTTAGTAGAGGTTCTGCATTTA AGTTGCTAGCCGAATCGTATCCTTTCCATACGAATAAGAAGCTGTTGACCATGTTCGATTACGAGAGCCAGTCTGTGAATTGGATGGCTCAGAGTGCCAA GGAGAAAGGTGCTAAAGTCCACAGTGCTTGGTTCAAGTGGCCTACTCTTAAGCCTTGTTCGACCGACTTGAGGAAGCGAATTACAGACAAGAAAAGGCGT CGTAAGAAGGATTCTGCTACCGGTTTGTTTGTGTTTCCGGTGCAGTCGAGGGTTACCGGTGCTAAGTATTCATACCAATGGATGGCATTGGCTCAGCAGA ACAATTGGCATGTGTTGCTTGATGCGGGGTCTTTAGGTCCTAAAGACATGGATTCACTCGGTTTATCGTTATTTCGTCCTGATTTCATAGTCACATCGTT CTATAGGGTGTTTGGGTTCGATCCTACCGGGTTTGGATGTCTTCTTATTAAGAAATCGGTCATGGGATGCCTTCAGCATCAGTCGGGAAGTACAGGGTCC GGTATAGTGAAGATAACTCCGGAGTATCCTCTCTATTTAAGCGATTCGGTAGATGGTCTGGATGGCTTGGTAGGAAACGAAAATGATTACGAAGAAGCTG TTGGAAAAGACGAAAATGCCGCTACTGAATCGCGTCCAGGAGGAATGCAGATGCCTGCATTCTCGGGGGCATATACGTCCGCTCAAGTGAGGGATGTTTT CGAGACTGAGATGGAGCACGACAACAGTTCGGATAGAGATGGAACGAGCACGATATTTGAAGAGGCTGAGAGTGTCTCGGTTGGAGAAGTGATGAAAAGT CCCGTCTTTAGTGAAGATGGTTCTTCGGACAATTCGTTTTGGATTGATTTGGGGCAGTCTCCATTAGGGTCTGATTATGGAGGCAAGCATAAATCAGCCT CTCCACTGCCTCCTTTCTGGTTCTCCGGCAAGAAGGCTAATAATCAAAAGAAGCTCTCATCGCCTAAACCCATTTCGAAGATCTATAGCAGTCCATTGTA TGATGATCACAAAGTAGTGATGAACTCACATGATGATCATCAACATGTGTTGTCATTTGATGCTGCAGTTTTATCAGTTTCTCATGAACTGGACCGGGTT AAAGAGGTTCCTGAAGAAGAGCAGTATGCTAACGGTTCGAATCATACCTATGTTTCCGAGATTGAAGAAGAATCGAGTAATGGCTTCCAACACAATGGCT CGGAAGATAAGAAGGAGAGCGCGATAAGAAGAGAAACAGAAGGAGAGTTTCGGTTGTTGGGGAGAAGGGAAGGGAGTAGATTTGCAGGTGGTGGTAGATT CTTAGGGGTGGATGAAAGTGAACAGCAGCATCCAAGTAGGGGGAGAAGGGTATCGTTTACAGCGGAAGAGAGTCGAAAAGATCGAAACTTTGAGCCGACC GAAGTGCATTTAGCTGCGCTAGACGATAACGATGATGAGTACACGAGCGATGGCGAGTTTGGAGACGGGTTGCAAGAGTTGGACAGTAGGAGAGAGCCTG AGATCATTTGCCGCCATTTGGATCATGTGAATATGTTGGGGCTCAACAAAACGACTCTGAGGCTTCGGTTTCTGATCAACTGGTTAGTGACCTCGTTGCT GCAGCTGAGATTACCGAATGTTGATGGTGAGGAAGGAGGAGGAGCGCATCTCGTCCATATCTATGGACCGAAGATAAAGTACGAGAGAGGTGCTGCTGTG GCGTTCAATGTTCGAGACAGAAACCGTGGTGGTGGTGGCATTGTGAGCCCTGAAGCTGTTCAAAGGCTAGCTGAAAAGGAAGGTATATCTCTTGGCATTG GATTTCTCAGTCACATACGAATTGTCGATAGCCCACCGGGGGCTATGCAAAATGGTGGTCATCATCAGATGATCAATGGGAAAACAGGTTTCGTTAGAGT TGAAGTTGTCACTGCTTCACTCGGGTTTCTGACCAACTTTGAAGATGTTTACAAGCTGTGGGCTTTTGTCTCCAAGTTCCTCAATCCTGCATTCACAAGA GAATGTACCCTCCCCACAGTTGAAGAAGGCGACGAAACTTGA
AA sequence Show only first row Show all	>Lus10019650 pacid=23139304 polypeptide=Lus10019650 locus=Lus10019650.g ID=Lus10019650.BGIv1.0 annot-version=v1.0 MHLSLWKPISHCAALLLDKRSRRKHGAEEESDLEISKNPSLLRKIQENKLREALEEASEDGSLSKSKDIDESEFANYQEEETLGRSRSLARLHAQREFLR ATSMAADRVFESSESIPELNESFSKFLTMYPKYESSEKVDQLRSDEYSHLSPPKVCLDYCGFGLFSYLQTLHYWETSTFSLSEITANFSNHALYGGAEKG TLEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVHSAWFKWPTLKPCSTDLRKRITDKKRR RKKDSATGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIVTSFYRVFGFDPTGFGCLLIKKSVMGCLQHQSGSTGS GIVKITPEYPLYLSDSVDGLDGLVGNENDYEEAVGKDENAATESRPGGMQMPAFSGAYTSAQVRDVFETEMEHDNSSDRDGTSTIFEEAESVSVGEVMKS PVFSEDGSSDNSFWIDLGQSPLGSDYGGKHKSASPLPPFWFSGKKANNQKKLSSPKPISKIYSSPLYDDHKVVMNSHDDHQHVLSFDAAVLSVSHELDRV KEVPEEEQYANGSNHTYVSEIEEESSNGFQHNGSEDKKESAIRRETEGEFRLLGRREGSRFAGGGRFLGVDESEQQHPSRGRRVSFTAEESRKDRNFEPT EVHLAALDDNDDEYTSDGEFGDGLQELDSRREPEIICRHLDHVNMLGLNKTTLRLRFLINWLVTSLLQLRLPNVDGEEGGGAHLVHIYGPKIKYERGAAV AFNVRDRNRGGGGIVSPEAVQRLAEKEGISLGIGFLSHIRIVDSPPGAMQNGGHHQMINGKTGFVRVEVVTASLGFLTNFEDVYKLWAFVSKFLNPAFTR ECTLPTVEEGDET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Lus10019650 [exp]	0	1
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Lus10031130 [exp]	3.2	0.7662
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	23.8	0.6796
AT1G28390			Protein kinase superfamily pro...		Lus10039770 [exp]	29.9	0.6474
AT1G75140			unknown protein		Lus10010815 [exp]	29.9	0.6779
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10040162 [exp]	31.2	0.6196
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031871 [exp]	38.2	0.6517
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10025241 [exp]	43.3	0.6200
AT1G01300			Eukaryotic aspartyl protease f...		Lus10003999 [exp]	52.5	0.6274
AT1G28610			GDSL-like Lipase/Acylhydrolase...		Lus10010208 [exp]	54.2	0.6240
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	68.7	0.5947

Compare expression of checked genes

Lus10019650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.