Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 51 / 3e-08 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G00260 51 / 3e-08 B3 MEE45 maternal effect embryo arrest 45, Transcriptional factor B3 family protein (.1) AT2G24645 50 / 8e-08 Transcriptional factor B3 family protein (.1) AT1G26680 50 / 8e-08 B3 REM17 transcriptional factor B3 family protein (.1) AT4G31610 47 / 5e-07 B3 REM1, ATREM1 REPRODUCTIVE MERISTEM 1, Transcriptional factor B3 family protein (.1) AT5G60130 47 / 5e-07 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT4G33280 47 / 9e-07 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G31690 45 / 3e-06 B3 REM9 Transcriptional factor B3 family protein (.1) AT4G31680 44 / 6e-06 B3 REM8 Transcriptional factor B3 family protein (.1) AT4G31660 42 / 2e-05 B3 REM7 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000746 [exp] 166 / 5e-54 AT3G18990 56 / 8e-10 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10039303 [exp] 56 / 4e-10 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 55 / 1e-09 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 55 / 1e-09 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 55 / 1e-09 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016285 [exp] 55 / 1e-09 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 54 / 2e-09 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025913 [exp] 54 / 3e-09 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10038189 [exp] 53 / 4e-09 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G057101 [exp] 65 / 1e-13 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 62 / 4e-12 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 60 / 2e-11 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 56 / 5e-10 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 54 / 2e-09 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 49 / 1e-07 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 47 / 4e-07 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 47 / 4e-07 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 47 / 8e-07 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.007G035700 [exp] 45 / 2e-06 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10019652 pacid=23139228 polypeptide=Lus10019652 locus=Lus10019652.g ID=Lus10019652.BGIv1.0 annot-version=v1.0 ATGATATATCAGTACATACCAACGGAGTTTGAGGGGAGACACAGGGAAAGACTAATTGGAATGTTTGCAACTTTGGAGGTTGCTAGTGGGGAAACATGGG AGGTTGAGTTGGTGAAAAATGGCGGAGATGGGAAGATCTGGTTAGCAAATGGATGGGGAGAGTTCGCAAAGCACCAATTTTTGAAGCAAGGAGATGTTCT GGTTTTCAGGTTGGAGCAAGATAGCTACTTCCATGTCATGGTGTTTGATCCCAGTACTGTCTCTGAAAGGATCAAGTGCTTTAGCCATGATCAAGTGGAA GTTGAGGAAGGGTTTGTTGTTGGGAATGAGACAGGAAAGGGGGAAATGGGAGGTGGTGAAGAGAAGAGGAGAAAGGTTTGGAAATGA
AA sequence Show only first row Show all	>Lus10019652 pacid=23139228 polypeptide=Lus10019652 locus=Lus10019652.g ID=Lus10019652.BGIv1.0 annot-version=v1.0 MIYQYIPTEFEGRHRERLIGMFATLEVASGETWEVELVKNGGDGKIWLANGWGEFAKHQFLKQGDVLVFRLEQDSYFHVMVFDPSTVSERIKCFSHDQVE VEEGFVVGNETGKGEMGGGEEKRRKVWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	0	1
AT5G10310			unknown protein		Lus10025740 [exp]	1.4	0.8507
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10043454 [exp]	3.7	0.7423
AT5G02440			unknown protein		Lus10023770 [exp]	6.6	0.7823
AT1G29270			unknown protein		Lus10007304 [exp]	6.9	0.7885
AT1G76140			Prolyl oligopeptidase family p...		Lus10021835 [exp]	6.9	0.7635
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10040716 [exp]	7.4	0.7726
AT5G10750			Protein of unknown function (D...		Lus10020102 [exp]	9.2	0.7494
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10030133 [exp]	10.4	0.7825
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10037169 [exp]	13.1	0.7614
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10027718 [exp]	13.4	0.7725

Compare expression of checked genes

Lus10019652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.