Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65220 87 / 6e-21 Ribosomal L29 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000745 [exp] 208 / 6e-68 AT5G65220 167 / 3e-53 Ribosomal L29 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093700 [exp] 120 / 1e-33 AT5G65220 166 / 6e-53 Ribosomal L29 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0346 [flax] [poplar] Ribo_L29 PF00831 [flax] [poplar] Ribosomal_L29 Ribosomal L29 protein
Representative CDS sequence Show only first row Show all	>Lus10019653 pacid=23139300 polypeptide=Lus10019653 locus=Lus10019653.g ID=Lus10019653.BGIv1.0 annot-version=v1.0 ATGTTGAGCTTGTCAATTGCTGCTGCTACTTCACTACCCAAGCTCTCCCTCCCATTCCACACCCACAACAAATCCTCATTCGCCGGCGTCCAAATCCCGC AGAAATGCCGCCTCCTCCCAATCCGTAGAACGGCGGCGGCTTCGGTGGTAATGATGGCGAAGAAAGACGACGAGCTGAAGGAGATTAGAACGCTGACCAC CGACGAGATCAACGAGCAGGTCGTTGACCTTAAAGGCGAGCTCTTTATGCTTCGGTTACAAAAGTCCGTCAGGAACGAGTTCAAGTCCAGCGAGTTCAGC CGCATGCGTAAAAAGGATAGAGTTGGATGGAATGAGCAAATGAATGTAATTGTAGGGCCACCAATGAAATGTTCTGTAGGCAATTGTTATGCTTTTTGTA GTATCTTTCATGTGAACAAGAACTGGATGAACTGGAGTTCAGATCGAGTTCATGTTCAGTATTTCATATATGGTTGCGATACTGGATCCATATGTAAGGG TGTGGACAGCATGAAAACGGGCCTGGATTTGCCACCAACACCATTGTACTATAACCTGATGTGCTTCCTCCAATCATTTGGTTTTGTGCATTCCTTTGTG TTGACCATTGTGATGATGTTCCGATGGCAGATTGCACGAATGCTGACGGTGAAACGGGAAAGGGAGATCGAAGAAGGAATCAACAAGAGGATATCGAGGA AGCTGGACCGGCAATGGAAGAGAAGCATCGTGGTGAGACCGCCTCCTTCATTGAAGAAGAAGGAGGAAGAGGCTGCAGCAGAAGCTGCCGCTGCTGCTGC GAAATCTGCTTGA
AA sequence Show only first row Show all	>Lus10019653 pacid=23139300 polypeptide=Lus10019653 locus=Lus10019653.g ID=Lus10019653.BGIv1.0 annot-version=v1.0 MLSLSIAAATSLPKLSLPFHTHNKSSFAGVQIPQKCRLLPIRRTAAASVVMMAKKDDELKEIRTLTTDEINEQVVDLKGELFMLRLQKSVRNEFKSSEFS RMRKKDRVGWNEQMNVIVGPPMKCSVGNCYAFCSIFHVNKNWMNWSSDRVHVQYFIYGCDTGSICKGVDSMKTGLDLPPTPLYYNLMCFLQSFGFVHSFV LTIVMMFRWQIARMLTVKREREIEEGINKRISRKLDRQWKRSIVVRPPPSLKKKEEEAAAEAAAAAAKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65220			Ribosomal L29 family protein ...		Lus10019653 [exp]	0	1
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10033200 [exp]	1.7	0.9809
AT2G33450			Ribosomal L28 family (.1)		Lus10011792 [exp]	2.0	0.9726
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10035863 [exp]	4.0	0.9628
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Lus10037307 [exp]	4.5	0.9660
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	5.9	0.9657
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	6.2	0.9662
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10032862 [exp]	7.2	0.9338
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Lus10035720 [exp]	7.4	0.9597
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10000520 [exp]	8.0	0.9564
AT3G15190			chloroplast 30S ribosomal prot...		Lus10005538 [exp]	10.4	0.9556

Compare expression of checked genes

Lus10019653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.