Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23460 1065 / 0 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT1G31930 704 / 0 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT4G34390 701 / 0 XLG2 extra-large GTP-binding protein 2 (.1) AT2G26300 160 / 1e-42 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT2G46380 63 / 6e-10 Protein of unknown function (DUF3133) (.1) AT3G61670 59 / 2e-08 Protein of unknown function (DUF3133) (.1) AT1G01440 52 / 2e-06 Protein of unknown function (DUF3133) (.1) AT4G01090 51 / 4e-06 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000743 [exp] 1269 / 0 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10023838 [exp] 796 / 0 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 776 / 0 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10010421 [exp] 686 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 678 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10004784 [exp] 152 / 2e-39 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10003115 [exp] 151 / 3e-39 AT2G26300 663 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10000742 [exp] 77 / 6e-15 AT4G37090 116 / 2e-31 unknown protein Lus10001910 [exp] 60 / 8e-09 AT1G01440 275 / 5e-82 Protein of unknown function (DUF3133) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G035200 [exp] 1210 / 0 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 1156 / 0 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 778 / 0 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.009G109400 [exp] 778 / 0 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.015G031100 [exp] 744 / 0 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.012G042500 [exp] 743 / 0 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 731 / 0 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 727 / 0 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.006G219500 [exp] 162 / 2e-43 AT2G26300 645 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.018G048600 [exp] 151 / 4e-39 AT2G26300 659 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00503 [flax] [poplar] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10019655 pacid=23139324 polypeptide=Lus10019655 locus=Lus10019655.g ID=Lus10019655.BGIv1.0 annot-version=v1.0 ATGCCACTGGAGGATGAAGATCGAGGTGGAGGAGGAGTTCAGTACTCTTTCGCTCTGGAGTACGATGGTCCACCGCTGCCGTACGATCTCCCGCAAGCTG TCCCGATCAACATCTGTGAAATCCCTGTCGCGGCTGTGGTGGTTTCTCAGGTCGCCGATGAGGACGAGCTACCGTTGCCGGTGGTCAAGCCGCTGTTGTC ATCCGTGATAAGCGGCAACGATGAATCGTCGGCGGCGACGACTGTTTCTCCGACGTCGGTGATCGAGAGGGCGGCGGAGAAGAGTCTGGATTCGGGGCTA CTTTCGGGGGAGCTGAGCAGCTCCGGGGCGATTGAATTTTCCGAGAGTTTGTCGACTGTTAGGGTTTCGGAGGAGTTGAATCACGATTGGGGGTCGAATC TATCGGTTCTGAGTGCTGAGTATCCTTCTTCTAGGGTTTCTAGTGTGAAGCCAGCTTCAGGGGAGTGTGGTGGTAATAATGGAGATGGTAGGAGGGGGCA AGTTGTTAAGTTTGTTGATGTCGATTCGGATGGAGAAGACGAAGAAGAAGAGGAAGGGGAGGTTGATAATGATGACGAAGAAGAGTATTACGAAGATCAG CAGCAGCAGCCGAGGAGGGCTGTGGAGCAAGTTAAGAGAGAGCCTCAGAGCAAAGGGAAGAAAGGGACGTGTTATAGATGCTTTAAAGGGAATAGATTTA CAGAGAAGGAAGTCTGTTTAGTTTGTGATGCTAAGTATTGCAGTAATTGTGTGCTTAGAGCTATGGGATCAATGCCTGAAGGGAGGAAGTGTCTGAATTG TATCGGCTACCCTATCGACGAATCGAAGAGGCCGAATCTAGGGAAATGTTCGAGGGTGCTCAAGAGGTTGTTGAATGATTTGGAGGTGAGGCAGATAATG AAGGCCGAGAAGTTCTGCGAGGCGAATCAGTTGCCTCCCGAGTATGTGTGTGTGAACGGGATGCCTCTTTGTCACGAGGAGTTGGTCCTTTTGCAGAGTT GTGCTAACCCGCCGAAGAAGTTGAAGCCCGGGAACTATTGGTATGATAAAGTGTCCGGTCTTTGGGGGAAGGATGGACAGAAGCCTTCGCAAATCGTGAG TGCTCATATGAATGTGGGGGGTCCGATTGATTCGAATGCCAGCAATGGAAACACGCAGGTTTACATTAATGGCAGGGAGATTACGAAAGTCGAGCTTAGA ATGTTGCAGTTGGCAGGAGTTCAATGTGCTGGCAACCCACATTTTTGGGTGAACGACGATGGATCGTATCAAGAGGAGGGACAAAAGAACACTAAAGGCT ACATTTGGGGCAAAGGTGCAATGAAGCTTGTATGCACGTTCCTTTCACTGCCAGTTCCATCCAAGTCTTCTAATGAATCTGAGGAGCAAGTGAACAGTCT ACCTAGCAGAAGCATGCCGGATTATCTCGAACAAAGGACACTTCTGAAGATTCTTTTAGTTGGATATAATGGATCTGGGACAAGTACTATTTTCAAGCAG GCCAAGATTCTTTACCAACCAACCCCTTTCACCGAGGATGAGCGAGAAAATATTAAAATGACTATCCAGAGCAATGTGTATGGCTATCTTGGTATTCTCT TGGAAGGACGAGACCGGTTTGAAGAGGAAAGTTCAGCCAAGGGAAAGAAAGATCAAGTGTCTAAACAAACTGACCCCAGTGGCAGTGGCACTAGCAATAG CTCAAAAACTGTGTACTGTATTGGGCCGAGGCTTAAAGCATTCTCAGACTGGCTTCTCAAGACCATGGTGTCAGGAAATCTCGATGCCATTTTTCCTGCT GCCACTCGGGAATATGCACCATTAGTTGAAGAATTGTGGAAAGATGCTGCCATTCAAGCAACATACAGTCGGAAAAGCGAACTGGAAATGCTTCCCAGTG TTGCAAGCTATTTCCTAGAGAGGGCAGTTGAGATATTGGCACCAGATTATGAACCCTCTGATTTGGATATCCTCTACGCCGAGGGTGTTACTTCCTCGAA TGGTGTGGCTTCTCTGGATTTCTCGTTTCCCCAGTCATCATACGACGATAAGTTTGACCATGATGAACAACACGATTCCCTTCTTAGATATCAACTGATC AGGCTACAACCACGAGGAATCGGCGAAAACTGCAAGTGGCTGGAGATGTTCGAAGACATCGGGATGGTCATTTTCTGTGTCTCCTTGAGCGACTACGACC AGGTGGCAGTCGACGGCACTAACAAAATGATGCTAAGCCGGAAATTCTTCGAGACCATAGTGATGCATCCAACCTTCGAGCAGATGGACGTCCTCCTGAT CCTGAACAAATTCGACACTTTCGAAGAGAAGATAGAACGAGTACCCTTGACAGAATGTGAATGGTTTGACGATTTCCACCCTCTCGTGAGCCGGCATCGT TCCAGCACCAGCAGCAGCCGAAGCATCAATCACAATCCTTCGTTAGGCCAGCTGGGTTTCCACTACATCGCGGTCAAATTCAAGCGACTCTACGCTTCAC TCACCGGCCGGAAGCTGTTCGTCTCCATGGTCAAAGCGTTGGAACCCGACAGCGTGGACTCTTCTCTCAAGTACGCGAGGGAGATCATGAAGTGGGAAGA AGAGAGGCCGAACTTCAGTGTGAGTGAGTATTCGATTTACAGCACTGAAGCCAGCTCTTATTCGCCTTGA
AA sequence Show only first row Show all	>Lus10019655 pacid=23139324 polypeptide=Lus10019655 locus=Lus10019655.g ID=Lus10019655.BGIv1.0 annot-version=v1.0 MPLEDEDRGGGGVQYSFALEYDGPPLPYDLPQAVPINICEIPVAAVVVSQVADEDELPLPVVKPLLSSVISGNDESSAATTVSPTSVIERAAEKSLDSGL LSGELSSSGAIEFSESLSTVRVSEELNHDWGSNLSVLSAEYPSSRVSSVKPASGECGGNNGDGRRGQVVKFVDVDSDGEDEEEEEGEVDNDDEEEYYEDQ QQQPRRAVEQVKREPQSKGKKGTCYRCFKGNRFTEKEVCLVCDAKYCSNCVLRAMGSMPEGRKCLNCIGYPIDESKRPNLGKCSRVLKRLLNDLEVRQIM KAEKFCEANQLPPEYVCVNGMPLCHEELVLLQSCANPPKKLKPGNYWYDKVSGLWGKDGQKPSQIVSAHMNVGGPIDSNASNGNTQVYINGREITKVELR MLQLAGVQCAGNPHFWVNDDGSYQEEGQKNTKGYIWGKGAMKLVCTFLSLPVPSKSSNESEEQVNSLPSRSMPDYLEQRTLLKILLVGYNGSGTSTIFKQ AKILYQPTPFTEDERENIKMTIQSNVYGYLGILLEGRDRFEEESSAKGKKDQVSKQTDPSGSGTSNSSKTVYCIGPRLKAFSDWLLKTMVSGNLDAIFPA ATREYAPLVEELWKDAAIQATYSRKSELEMLPSVASYFLERAVEILAPDYEPSDLDILYAEGVTSSNGVASLDFSFPQSSYDDKFDHDEQHDSLLRYQLI RLQPRGIGENCKWLEMFEDIGMVIFCVSLSDYDQVAVDGTNKMMLSRKFFETIVMHPTFEQMDVLLILNKFDTFEEKIERVPLTECEWFDDFHPLVSRHR SSTSSSRSINHNPSLGQLGFHYIAVKFKRLYASLTGRKLFVSMVKALEPDSVDSSLKYAREIMKWEEERPNFSVSEYSIYSTEASSYSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	0	1
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	1.7	0.8904
AT2G46550			unknown protein		Lus10005973 [exp]	2.4	0.8815
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	2.4	0.8811
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10032777 [exp]	2.8	0.8663
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	3.2	0.8601
AT3G51130			unknown protein		Lus10014270 [exp]	5.7	0.8776
AT3G48195			Phox (PX) domain-containing pr...		Lus10001232 [exp]	6.3	0.8742
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10020229 [exp]	7.4	0.8556
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	7.9	0.8715
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10043482 [exp]	8.8	0.8004

Compare expression of checked genes

Lus10019655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.