Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37090 105 / 1e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000742 [exp] 302 / 3e-104 AT4G37090 116 / 2e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G034600 [exp] 181 / 2e-58 AT4G37090 106 / 4e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019656 pacid=23139282 polypeptide=Lus10019656 locus=Lus10019656.g ID=Lus10019656.BGIv1.0 annot-version=v1.0 ATGTCGGCCAGAGATGAATCGGATTCCGACGCACCGGAGGAGTTCACCGCCGATCAGGGAATCGAATTAGATGCGGAGATAAGGAAGATTCAGAAGGAGA ACAAGTCAAGAATTACTCGTGAGGGTAAAGAACGGCGAAGGAAATGGGCAGAGAGGAAGACGCCACGATCATCCAAAAAGGAAGACAAAGAAGAAGTCAA AGAAGCTATCGAAACTGAAGAGGAAGACGAAGAGTCTGCAAGTTCCAAAGGGATGCTTCCAAACAACATTGTTCAACTACTAGCTGCTCGTGAGAAGAAA GTGTTTTCTGCAAAGTCTGATGATGATGATGATGAGAAGACTGGCTCAGGTGCAAAGCTTCCCACAAGGAAGAAGAAGAAGGCGAGAGGCTCCGGGCCAC ATACTGTTATTTTGAACGAGGTATCCCCGCCACCTTGTTTACAGAACGCGTTAGAGTTCCTGAAGGAGAACAAAATGCGGGTTGCAAGATCGTCAGCTGT TCTCAACAACTCCAACCAAGCTCTCCGCCTTATATCCGCTTCTGGCTTGTTGAGTAAGAACTGA
AA sequence Show only first row Show all	>Lus10019656 pacid=23139282 polypeptide=Lus10019656 locus=Lus10019656.g ID=Lus10019656.BGIv1.0 annot-version=v1.0 MSARDESDSDAPEEFTADQGIELDAEIRKIQKENKSRITREGKERRRKWAERKTPRSSKKEDKEEVKEAIETEEEDEESASSKGMLPNNIVQLLAAREKK VFSAKSDDDDDEKTGSGAKLPTRKKKKARGSGPHTVILNEVSPPPCLQNALEFLKENKMRVARSSAVLNNSNQALRLISASGLLSKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37090			unknown protein		Lus10019656 [exp]	0	1
AT4G15930			Dynein light chain type 1 fami...		Lus10037494 [exp]	1.4	0.8805
AT4G15930			Dynein light chain type 1 fami...		Lus10006500 [exp]	4.9	0.8063
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	5.8	0.8262
					Lus10000961 [exp]	7.7	0.7751
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	8.3	0.8084
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026814 [exp]	8.4	0.7960
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	10.7	0.8049
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10033049 [exp]	13.1	0.7658
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	13.2	0.8003
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10022023 [exp]	21.9	0.7888

Compare expression of checked genes

Lus10019656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.