Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23450 621 / 0 Protein kinase superfamily protein (.1.2) AT5G66790 429 / 1e-142 Protein kinase superfamily protein (.1) AT1G25390 269 / 4e-81 Protein kinase superfamily protein (.1) AT1G18390 268 / 2e-80 Protein kinase superfamily protein (.1.2) AT5G02070 263 / 9e-79 Protein kinase family protein (.1) AT3G53840 255 / 6e-76 Protein kinase superfamily protein (.1) AT5G38210 251 / 7e-74 Protein kinase family protein (.1) AT1G69730 251 / 4e-73 Wall-associated kinase family protein (.1) AT1G69910 246 / 1e-72 Protein kinase superfamily protein (.1) AT1G66880 254 / 2e-72 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000741 [exp] 1068 / 0 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032741 [exp] 506 / 3e-171 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011652 [exp] 315 / 7e-103 AT2G23450 337 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 266 / 1e-79 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 265 / 2e-79 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 262 / 4e-78 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 254 / 1e-75 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10036691 [exp] 239 / 8e-70 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10004504 [exp] 237 / 8e-69 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130900 [exp] 686 / 0 AT2G23450 773 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G034500 [exp] 644 / 0 AT2G23450 731 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G130600 [exp] 590 / 0 AT2G23450 605 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G038600 [exp] 574 / 0 AT2G23450 620 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 279 / 7e-85 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) Potri.004G096550 [exp] 278 / 6e-84 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.015G044750 [exp] 277 / 7e-84 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G097100 [exp] 276 / 1e-83 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.004G096900 [exp] 276 / 6e-83 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.017G118100 [exp] 276 / 6e-83 AT5G38210 575 / 0.0 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019657 pacid=23139206 polypeptide=Lus10019657 locus=Lus10019657.g ID=Lus10019657.BGIv1.0 annot-version=v1.0 ATGATCGTCCCTTCCCAATCACGAATCCTGCCTCTTCTGATACTCGCAACTTCAATTCTCAGTTGGGGCTTCCAAGCAGCGGCAGCCAACTTGACGATCT GCTCACAGTTCTGCGGCGCCGGCGGAGGAAAGCAACGTGTTCCCTACCCGTTCGGATTCTCATCCGGATGTCCGATTCAGCTCAACTGCACGGAGCAGAC AGGAGAGATCCACATCGGAGAGTTCCGAGTACAGAACTTCACCTCCGACGGGGGGATCCTCGTCGATCTCCCGGGGAAATGTAACCGTCCGAAAGAGTCA CTATCCTCTCTCTTCGGCTCGAACTTCGCGCCTTCCCGGAGCACCAACCTGCTACTCCAGAATTGCAGCCGTGAGCAATTAAGCGGTACGTGCGAGATCC GGACGAACTCGATCGGGCGCGGGATGAACAACAGCAGCGGATGCGATTCGACGAGCGACAACATCACCTGCTTCCCATTCGGTGAGAAATCCGGCCTCGC GGCGATGATTTATACAGAGGTTACGGATATCCCGTGCGCGTTTTTGTATTCATCGATGGCGGGTGGGGTTACTCCGGCTCTGGTCAACGACTCGTTGGTG TCGCTGGAGCTCGAGAGGATGAAATTGGAGTCGTGGCTAGATGGAAGCTGCGCGGTTAACGGGAGTAGCTCGTGCTCCCGGCTTGCTCATTGTAAAAATG TTAGGCTTGGCCGTGGACAAGAAAGGAAGTTCGGATTCCGGTGCCGGTGTAGAGAAGGAATGATCGGAGATGGTTACAGCGACGGCAGTGGTTGCCGGAG AGCTTCCAAATGCAACCCATCGAAGTACATGTCCGGCAACTGTGGAGGAACCACAGAGATCGAGAAGGCCACAAACGGATTCTCCGATAAGCAGCGGCTA GGAACGGGAGCTTACGGAACTGTCTACTCGGGAAAACTCGACCACACCGAGGAATGCGTAGCTATCAAGAAGATCAGGCACAACGACACCGACAGCATTG ATCAAGTCATGAACGAAATCAAGCTGCTGTCTTCGGTAAGCCACCCGAATCTCGTACGCCTTTTGGGATGCTGCATCGAAGAAGGTGAGCAGATTCTGGT GTACGAGTTCATGCCCAACGGCACTCTGTGTCAGCACCTGCAAAGAGAGAACGGGAAGGAGATACTTCCGTGGCAAGTAAGGCTGACGGTAGCTTCCGAA ACTGCCAACGCCATCGCTTACTTGCATTCGATGAACCCACCGATCTACCACCGTGATATCAAGTCCAGCAACATACTGTTAGACTACAATTACAAGTCGA AGGTGGCTGATTTCGGCCTATCGAGGCTCGGGATGACTACTGAGTCATCCCACATCTCGACGGCCCCACAGGGCACGCCGGGGTATTTAGACCCTCAGTA CCATCAGTACTTCCACTTGTCGGACAAGAGTGATGTCTACAGCTTCGGAGTGGTCTTGCTCGAGATCATAACCGGATTGAAAGTTGTGGACTTCTCCCGC CCCCACAGCGAAGTCAACTTGGCCGCACTTGCAGTGGACAGGATCGGGAGAGGGTGTGTCGACGAGGTGATCGATCCTTATCTCGAACCGGATAGGGACG CGTGGACGTTGTCATCCATTCACAATGTCGCGGAGCTGGCGTTCAGGTGCCTTGCGTTCCACGGGGACATGAGGCCTACGATGACGGAAGTTGCGCAGGA GCTAGAGAATGTTAGGCTTAGCGGCTGGATTCCTAATAACATGTTCATGGAATCTCCCGGTCGGTCCTCGATTTCGATGTCGGAGGAGGACGATGGTTCG GTGAAGAAGGCAAGAAGCGTACGGAGTCAGAGGTTGATCGTTCCTGAGCGTTTGGGTTCGATGGAGGTGGTGAAGGAGAAAGATAGCTCCCCAGTTTCGG TGAGGGATCCTTGGTTTAGCGAGCAGAGCTCACCTTCGTCCAACAGTTTGCTAAGTAATGCAGTTTAG
AA sequence Show only first row Show all	>Lus10019657 pacid=23139206 polypeptide=Lus10019657 locus=Lus10019657.g ID=Lus10019657.BGIv1.0 annot-version=v1.0 MIVPSQSRILPLLILATSILSWGFQAAAANLTICSQFCGAGGGKQRVPYPFGFSSGCPIQLNCTEQTGEIHIGEFRVQNFTSDGGILVDLPGKCNRPKES LSSLFGSNFAPSRSTNLLLQNCSREQLSGTCEIRTNSIGRGMNNSSGCDSTSDNITCFPFGEKSGLAAMIYTEVTDIPCAFLYSSMAGGVTPALVNDSLV SLELERMKLESWLDGSCAVNGSSSCSRLAHCKNVRLGRGQERKFGFRCRCREGMIGDGYSDGSGCRRASKCNPSKYMSGNCGGTTEIEKATNGFSDKQRL GTGAYGTVYSGKLDHTEECVAIKKIRHNDTDSIDQVMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEFMPNGTLCQHLQRENGKEILPWQVRLTVASE TANAIAYLHSMNPPIYHRDIKSSNILLDYNYKSKVADFGLSRLGMTTESSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLLEIITGLKVVDFSR PHSEVNLAALAVDRIGRGCVDEVIDPYLEPDRDAWTLSSIHNVAELAFRCLAFHGDMRPTMTEVAQELENVRLSGWIPNNMFMESPGRSSISMSEEDDGS VKKARSVRSQRLIVPERLGSMEVVKEKDSSPVSVRDPWFSEQSSPSSNSLLSNAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23450			Protein kinase superfamily pro...		Lus10019657 [exp]	0	1
AT2G23450			Protein kinase superfamily pro...		Lus10000741 [exp]	1.0	0.9427
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10003387 [exp]	4.0	0.9118
AT1G34300			lectin protein kinase family p...		Lus10028711 [exp]	4.9	0.8575
AT4G37420			Domain of unknown function (DU...		Lus10030740 [exp]	5.3	0.8540
AT1G16670			Protein kinase superfamily pro...		Lus10042460 [exp]	5.7	0.8939
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	8.8	0.8687
AT3G14470			NB-ARC domain-containing disea...		Lus10026109 [exp]	11.0	0.8261
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	15.5	0.8580
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10010719 [exp]	18.7	0.8741
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	19.1	0.8747

Compare expression of checked genes

Lus10019657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.