Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37210 294 / 6e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000740 [exp] 567 / 0 AT4G37210 418 / 3e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G034200 [exp] 358 / 5e-121 AT4G37210 365 / 3e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G130800 [exp] 355 / 1e-119 AT4G37210 343 / 3e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G130800 [exp] 68 / 1e-12 AT4G37210 62 / 1e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019658 pacid=23139261 polypeptide=Lus10019658 locus=Lus10019658.g ID=Lus10019658.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAGCAGCAGCAACGGCTTCTGGATCGTCCTCGGCGACGATGGCCGACGACCAGCCGGCGGTGAGCGCGGCGGGGAATACTGTACTCCACG GTCAAACTTCGATCGAGGCCACAATCGAGTCGAACGCTCTGGGAGGCGCTGAGTCCACTTGTAACAACGACAACAACGGCGGAGGAGAGGCTTCGGCGGT CACTTCCGAGGGCGGCAGAGGTCAAGACAATAACACACTGGAGTTCGCTGAGGAGTTGAAGGAGAGAGGAACCAAGGCACTTAAGGAAGATGATTTCGAG GAAGCCGTTGAGTTCTTTAGTCGCGCCCTTGAAATCAGGGTTAAGCACTATGGTGAACTTGCTCCTCAATGCATCACTGCGTACTATCACTATGGACGAG CTCTCTTGTTTAAAGCTCAAGAGGAATCTGATCCGTTAGGTGCAATGCCTAAGAAGGAAGACGGAGATTCAAGACCGGTATCTGGTAAAGATGAAGCAGT TAAGAATGCAGTGAATGGCGAATCTTCCACCGCTTCAGCATCTAGCAACGTTCAAGAGGGTGGGAGTTCCAGCCATCAAAAGGAATCGTCAAATGATGGT GACAAAGAACAGGAAGACGATGAAGAAGAAGGAAGCGACAATGAGGAAACGACTGAAGCGGATGAGGACGAGTCTGATCTTGATTTGGCATGGAAAATGC TGGATCTCGCGAGGGCAATTGCTGAGAAGCACTCCGGTGATACGATGGATAAAGTGGATGTGTTATCTGCATTGGGTGAAGTTGCCTTAGAGAGAGAGGA CATTGAAACTTCTCTCGCTGACTACAAGACTGCTTTGTCAATCTTAGAGCGCATTGTTGAGCCCGACAGTAGGCTTATAGCTGAATTAAACTTCCGTATC TGCTTATGTTTGGAAGTCGGATCAATGGCAGAGGAAGCAATCCCATACTGTCAGAAAGCTATATCGGTGTGCAAGTCACGTCTGGATCGTCTCATTGCTG AATCAAAGAGTTCTTCCGAATCAGCATCAGCAGCAACACCTTCGGCTATCACAGATATGGAGGACGGCATCCAGCAGTCATCCACGGGACCTCTGCCTGA AGAATCTGCATCAGACAAAGAAGCAGAGATCGAAACGCTAATTGGCCTGTCCGTTGAGCTAGAGAAGAAGGTAAAGATCTGA
AA sequence Show only first row Show all	>Lus10019658 pacid=23139261 polypeptide=Lus10019658 locus=Lus10019658.g ID=Lus10019658.BGIv1.0 annot-version=v1.0 MAEEAAATASGSSSATMADDQPAVSAAGNTVLHGQTSIEATIESNALGGAESTCNNDNNGGGEASAVTSEGGRGQDNNTLEFAEELKERGTKALKEDDFE EAVEFFSRALEIRVKHYGELAPQCITAYYHYGRALLFKAQEESDPLGAMPKKEDGDSRPVSGKDEAVKNAVNGESSTASASSNVQEGGSSSHQKESSNDG DKEQEDDEEEGSDNEETTEADEDESDLDLAWKMLDLARAIAEKHSGDTMDKVDVLSALGEVALEREDIETSLADYKTALSILERIVEPDSRLIAELNFRI CLCLEVGSMAEEAIPYCQKAISVCKSRLDRLIAESKSSSESASAATPSAITDMEDGIQQSSTGPLPEESASDKEAEIETLIGLSVELEKKVKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10019658 [exp]	0	1
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10030325 [exp]	3.0	0.9281
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Lus10031147 [exp]	4.5	0.9070
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10029297 [exp]	6.6	0.8829
AT4G39200			Ribosomal protein S25 family p...		Lus10021706 [exp]	6.8	0.9243
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	9.5	0.8942
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10027545 [exp]	9.8	0.9053
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002845 [exp]	10.5	0.8998
AT3G49470		NACA2	nascent polypeptide-associated...		Lus10015579 [exp]	10.7	0.9063
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	12.7	0.9020
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023457 [exp]	13.2	0.9117

Compare expression of checked genes

Lus10019658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.