Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66580 123 / 5e-37 unknown protein AT3G50800 120 / 1e-35 unknown protein AT2G23690 119 / 2e-35 unknown protein AT4G37240 117 / 3e-34 unknown protein AT1G76600 71 / 6e-16 unknown protein AT1G21010 69 / 3e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000739 [exp] 152 / 7e-49 AT5G66580 105 / 6e-30 unknown protein Lus10016785 [exp] 137 / 3e-42 AT2G23690 138 / 4e-42 unknown protein Lus10012442 [exp] 78 / 9e-19 AT1G76600 152 / 2e-46 unknown protein Lus10033761 [exp] 73 / 8e-17 AT1G76600 150 / 1e-45 unknown protein Lus10037249 [exp] 67 / 2e-14 AT1G76600 130 / 4e-38 unknown protein Lus10035664 [exp] 64 / 1e-13 AT1G21010 125 / 4e-36 unknown protein Lus10007960 [exp] 42 / 3e-05 AT3G03280 109 / 3e-30 unknown protein Lus10013490 [exp] 42 / 3e-05 AT3G03280 110 / 6e-31 unknown protein Lus10036322 [exp] 0 / 1 AT1G76600 62 / 9e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130200 [exp] 149 / 2e-47 AT2G23690 174 / 2e-56 unknown protein Potri.007G033400 [exp] 149 / 3e-47 AT2G23690 165 / 7e-53 unknown protein Potri.004G149600 [exp] 115 / 9e-34 AT4G37240 125 / 5e-37 unknown protein Potri.009G110600 [exp] 113 / 7e-33 AT2G23690 112 / 1e-31 unknown protein Potri.009G110700 [exp] 76 / 4e-18 AT5G66580 77 / 2e-18 unknown protein Potri.004G149800 [exp] 73 / 2e-17 AT5G66580 91 / 7e-24 unknown protein Potri.005G259100 [exp] 61 / 5e-12 AT1G21010 186 / 9e-60 unknown protein Potri.012G045600 [exp] 59 / 1e-11 AT1G18290 129 / 1e-38 unknown protein Potri.015G036800 [exp] 57 / 3e-11 AT1G18290 122 / 1e-35 unknown protein Potri.002G002100 [exp] 54 / 9e-10 AT1G21010 163 / 1e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019659 pacid=23139322 polypeptide=Lus10019659 locus=Lus10019659.g ID=Lus10019659.BGIv1.0 annot-version=v1.0 ATGGGAAACTGCAGATCTTCTCAATCGACACGTGTTGCATCCTCGTCGACGGCGAAGCTGATCCTCCCGGACGGCAAGCTCCAAGAGTACGCGTACTCTG TAAAAGCTTCTTATGTGTTACAGAGGAATCCGGCGACCCATTTCATCTGCAACGCCGACGAGATGGAGTTCGACGATGTTGTGTCTGCAGTCAACGAGGA CGACGAGCTCCAACCGGGACAGCTCTACTTCGCCCTTCCGGTGAGCTGGCTGAACCACCCTCTGCAGCCGGAGGAAATGGCCGCATTGGCCGTCAAGGCC AGCTCCGCCTTGATGAAGCACGGCGGCGGATTCTTCGTCGACGGTGGGAAACCGGGGGTTCCCGATGCGGGGAAATCCAGTCATCGATGGTGA
AA sequence Show only first row Show all	>Lus10019659 pacid=23139322 polypeptide=Lus10019659 locus=Lus10019659.g ID=Lus10019659.BGIv1.0 annot-version=v1.0 MGNCRSSQSTRVASSSTAKLILPDGKLQEYAYSVKASYVLQRNPATHFICNADEMEFDDVVSAVNEDDELQPGQLYFALPVSWLNHPLQPEEMAALAVKA SSALMKHGGGFFVDGGKPGVPDAGKSSHRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66580			unknown protein		Lus10019659 [exp]	0	1
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003978 [exp]	2.0	0.8350
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10010795 [exp]	7.5	0.7376
AT5G42860			unknown protein		Lus10009749 [exp]	9.2	0.7724
AT2G23690			unknown protein		Lus10016785 [exp]	10.4	0.7124
					Lus10020868 [exp]	12.0	0.7378
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001938 [exp]	15.0	0.7597
AT4G25315			Expressed protein (.1.2)		Lus10014065 [exp]	16.4	0.7018
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10029240 [exp]	16.6	0.7707
AT2G24290			Protein of unknown function (D...		Lus10019053 [exp]	17.0	0.7448
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	27.1	0.7596

Compare expression of checked genes

Lus10019659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.