Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23755 83 / 6e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000575 [exp] 166 / 7e-54 AT2G23755 101 / 3e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032900 [exp] 98 / 2e-26 AT2G23755 146 / 3e-45 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019660 pacid=23139281 polypeptide=Lus10019660 locus=Lus10019660.g ID=Lus10019660.BGIv1.0 annot-version=v1.0 ATGGCGGCAGTCACAAAGCTCTTCACCGCATGCTCTGTTCTAATGGCTACACTCTTCGCTTACTCTGCCTCCGTCCAGTTAAACGACCCCGGCGCCTCTG CTGTAAACCTGACATCATTATCCACAAGATTCAACGGCGTCAGAGGAAGGGTTGGGAGGTTGACTTTCTGGGGTGGTCAGCTGTTGATGTGGAAAGTTGT GGCGGAGGATCTGCTTGTGAAGGGGATGGCAGCGTTTTGGTGTCTGGATCTGAGGGAGAGAGTTGTGAGGGAGAAAGTTGGGAGTGGGATTGTTGTTGCC TCAATGGCTCTGCATTTAGTGAAGGCTAATTGTGATGATAATGAAGGGAAGAACAAGAACAAGAAGAACAACAAGAATAATGGGATTTCAAAAGCTGTTG AGTATGGTAAGATCGTTGATTTTGATTTCTTTTGA
AA sequence Show only first row Show all	>Lus10019660 pacid=23139281 polypeptide=Lus10019660 locus=Lus10019660.g ID=Lus10019660.BGIv1.0 annot-version=v1.0 MAAVTKLFTACSVLMATLFAYSASVQLNDPGASAVNLTSLSTRFNGVRGRVGRLTFWGGQLLMWKVVAEDLLVKGMAAFWCLDLRERVVREKVGSGIVVA SMALHLVKANCDDNEGKNKNKKNNKNNGISKAVEYGKIVDFDFF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23755			unknown protein		Lus10019660 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011204 [exp]	2.0	0.9624
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	2.6	0.9668
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10035260 [exp]	2.8	0.9649
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	6.9	0.9594
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	7.7	0.9636
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011658 [exp]	8.7	0.9502
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	9.2	0.9576
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10020904 [exp]	10.1	0.9403
AT2G24560			GDSL-like Lipase/Acylhydrolase...		Lus10026405 [exp]	10.3	0.9340
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10019665 [exp]	12.4	0.9533

Compare expression of checked genes

Lus10019660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.