Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 476 / 3e-161 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 396 / 3e-129 Protein kinase superfamily protein (.1) AT3G21630 208 / 8e-59 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT3G01840 194 / 2e-53 Protein kinase superfamily protein (.1) AT1G51940 189 / 1e-51 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G20650 171 / 2e-47 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G28690 172 / 3e-47 Protein kinase superfamily protein (.1.2.3) AT3G58690 171 / 3e-47 Protein kinase superfamily protein (.1) AT3G07070 171 / 4e-47 Protein kinase superfamily protein (.1) AT1G61860 170 / 9e-47 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000577 [exp] 1142 / 0 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 434 / 9e-144 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10022488 [exp] 427 / 8e-142 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 353 / 6e-113 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10041323 [exp] 245 / 4e-72 AT2G23770 202 / 2e-56 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037389 [exp] 242 / 4e-71 AT2G33580 202 / 1e-56 Protein kinase superfamily protein (.1) Lus10016793 [exp] 238 / 1e-69 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10016794 [exp] 229 / 2e-69 AT2G23770 219 / 2e-66 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022487 [exp] 234 / 2e-65 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032100 [exp] 761 / 0 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 715 / 0 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 454 / 4e-152 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128300 [exp] 416 / 1e-137 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 391 / 4e-128 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G078700 [exp] 276 / 7e-84 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 275 / 1e-83 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.001G332800 [exp] 265 / 5e-79 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.009G010300 [exp] 252 / 6e-75 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032300 [exp] 228 / 8e-66 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019661 pacid=23139182 polypeptide=Lus10019661 locus=Lus10019661.g ID=Lus10019661.BGIv1.0 annot-version=v1.0 ATGAAGTTTCTTTCTTCATCGTTCTTCTGTCTTTCCCTCTGTGTCCTGTATTGCTTCTCTTTCGTTGTTCAGGCGCAGCAGGCTTACATTGGGCAAGGCA CAAATGACTGCTCCACCACAGCAAACTCAGCTCTAGGATACTCCTGCAATGGCGTCAACAGGACCTGTCAAAGCTATCTCACCTTCAGAGCTCAACCTCC TTACACCACCGTCGCTTCGATCTCGACCCTCTTGGGGTCAGAACCTTCTCAGCTTGCTGCCATCAACTCCGTCCCCGATGAAACTTCGACCTTTGATACC GACCGGCTGGTACTTGTTCCGGTCACTTGCTCATGTTCCGGTTCGTACTATGGAGCAAACTCGTCTTTTGTTGTTAGAAATGGAGATAACTTGTTCCTCA TTGCTAATGAAACTTTACAAGGTCTCTCGACTTGCCAAGCCATTGGGAATGGCAGCAGGACAGTGAATATATTTCCAGGTCAAACACTTGAGGTTCCTCT TAGATGTGCTTGCCCTACAAGGAACCAAACTGATCAAGGGATCAATTATCTTTTGAGTTATCTGGTTACTTGGGGAGATACTGTTTCAGCAGCTACCTTG AGATTTCGTGGTGATTTGAGATCGGCACTCCAAGCTAATGGACTTAGTGAGAATAGTGCCACAGTTTTCCCTTTCACAACCCTTCTAATTCCACTCCAAA CCCCACCTTCTAGTAACCAAACGGTAGCTCCATCACCGCCTCCTCCTCCGGTTTCTACTCCACCGACGCCTACTCCTCCTGCATCGAGTTCGAGCTCAAA CAAATCGTGGGTTTATGCTATTTCCGGGGTTTTGGGGGGAGTTATGGTTACTTTGGCTATTGGAACAATAACCTTTTTTATGTGCTTCCGCAAAAGGAAG GTAAAGTTAGATCCTTTAGCAACTTCTGAAAGCTATGAAGGTGTGGAGAAGCCAATGAAGAAAGTGCATGATGAAGAGTCTGCCAGTTTTTTCATGGAGA GTATATCCAGCATTGCTCACTCCATCCAGGTTTACACATTTGATGAGCTAGTAGCTGCAACTGATAACTTCAGTCCCAAATGCTTGATCAAAGGGTCTGT GTTTCACGGCAAGATCAAAGGCGATCTCGCTGCGATCAAGAGAATCGACGACGGAGTGGATGTGTCGAAGGAGATAAATTTACTCAACAAGATAAACCAT TCCAACATCATTCGTCTCTCCGGTGTCTGTTCCCACGATGGACACTGGTATCTTGTCTATGAGTTTGCTGCTAATGGAGCTTTGAGTGACTGGATATATA ATTCATCCAATAACAATGGTGGTGGGAAGAAAAAGGCATTGAGTTGGGCTCAAAGAATCCAGATAGCTCTGGATGTAGCTTTGGGACTTGACTATCTACA CAGTTTCACAACACCTCCACAGGTCCACAAGGACACCAAAGCCGGGAATGTGCTTCTCGACAGTGATCTCAGGGCTAAAGTATCCGGGTTCGCACAGGCG AGACCGGCTGCAGGAGAGGATGGCGATGGTTTCAACCTGACAAGGCACATCTTTGGGACGAAAGGCTATATGGCTCCCGAGTATTTGGAGAACGGTCTGG TCTCCACGAAGATGGATGTTTTTGCATTTGGGATTGTTCTGCTGGAGATGATCACTGGGAAAGAAGCTGCTACATTATATAGGGAAGGGGGAGGAGCTGC TAATGGGTTATTATCAGATATTTTGAACCAAGAGAATCCAGAGCAGTTCATGGACCCGTCAATGGAAGGAAGCTATCCATTGGACATTGCTGGATTTGTA GTGAAGCTGGTTGATGGCTGTCTAAACAAGAACTCGCTGGACCGACCGGCTATGAATGAGATTGTGCAGACTCTTTCTAGAATCTTGACTACTTCATTGT CCTGGGAGTTGTCTAATAACATCTCGGGTTATAGGAATCTCAGAGATGGTTAG
AA sequence Show only first row Show all	>Lus10019661 pacid=23139182 polypeptide=Lus10019661 locus=Lus10019661.g ID=Lus10019661.BGIv1.0 annot-version=v1.0 MKFLSSSFFCLSLCVLYCFSFVVQAQQAYIGQGTNDCSTTANSALGYSCNGVNRTCQSYLTFRAQPPYTTVASISTLLGSEPSQLAAINSVPDETSTFDT DRLVLVPVTCSCSGSYYGANSSFVVRNGDNLFLIANETLQGLSTCQAIGNGSRTVNIFPGQTLEVPLRCACPTRNQTDQGINYLLSYLVTWGDTVSAATL RFRGDLRSALQANGLSENSATVFPFTTLLIPLQTPPSSNQTVAPSPPPPPVSTPPTPTPPASSSSSNKSWVYAISGVLGGVMVTLAIGTITFFMCFRKRK VKLDPLATSESYEGVEKPMKKVHDEESASFFMESISSIAHSIQVYTFDELVAATDNFSPKCLIKGSVFHGKIKGDLAAIKRIDDGVDVSKEINLLNKINH SNIIRLSGVCSHDGHWYLVYEFAANGALSDWIYNSSNNNGGGKKKALSWAQRIQIALDVALGLDYLHSFTTPPQVHKDTKAGNVLLDSDLRAKVSGFAQA RPAAGEDGDGFNLTRHIFGTKGYMAPEYLENGLVSTKMDVFAFGIVLLEMITGKEAATLYREGGGAANGLLSDILNQENPEQFMDPSMEGSYPLDIAGFV VKLVDGCLNKNSLDRPAMNEIVQTLSRILTTSLSWELSNNISGYRNLRDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23770			protein kinase family protein ...		Lus10019661 [exp]	0	1
					Lus10027376 [exp]	1.4	0.9847
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	3.2	0.9838
					Lus10031841 [exp]	3.5	0.9814
AT2G48020			Major facilitator superfamily ...		Lus10008184 [exp]	4.5	0.9760
					Lus10027915 [exp]	5.3	0.9692
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	6.0	0.9797
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	11.0	0.9716
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	14.2	0.9720
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	14.7	0.9634
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10010885 [exp]	15.8	0.9653

Compare expression of checked genes

Lus10019661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.