Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33580 197 / 1e-56 Protein kinase superfamily protein (.1) AT3G21630 187 / 2e-53 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 153 / 9e-41 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G17220 143 / 2e-38 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G10620 144 / 1e-37 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT5G02290 140 / 1e-37 NAK Protein kinase superfamily protein (.1.2) AT3G19300 142 / 4e-37 Protein kinase superfamily protein (.1) AT1G79620 141 / 2e-36 Leucine-rich repeat protein kinase family protein (.1) AT5G65700 141 / 3e-36 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G31110 140 / 3e-36 Wall-associated kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016793 [exp] 451 / 5e-155 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10022487 [exp] 457 / 1e-150 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039406 [exp] 212 / 5e-64 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10021889 [exp] 206 / 6e-61 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10041171 [exp] 206 / 2e-60 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10008586 [exp] 196 / 5e-56 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10016299 [exp] 190 / 3e-54 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10035301 [exp] 179 / 2e-50 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10000577 [exp] 179 / 4e-50 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032300 [exp] 360 / 2e-119 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.005G128401 [exp] 337 / 4e-115 AT2G33580 196 / 1e-57 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 220 / 1e-65 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 213 / 5e-63 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.014G040000 [exp] 196 / 1e-56 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 187 / 3e-53 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.002G226600 [exp] 181 / 4e-51 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G156400 [exp] 177 / 1e-49 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 174 / 1e-48 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.005G128200 [exp] 174 / 1e-48 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10019662 pacid=23139296 polypeptide=Lus10019662 locus=Lus10019662.g ID=Lus10019662.BGIv1.0 annot-version=v1.0 ATGGCTAACAACTACAGGGAATTCGACGAGTCGATCAATCATCCAGTTCTGATTCCGGTACCTGGATTACCGGTTCTGAAAAGGCCCACGAATCCATCTG CACAAAGAAGGAAAGGATCAAATCACAACTGGATCATCATCATCATCATAAGTGTCAGCGTAGCTGTAAGTGTGATTTCTGCTCTTTGGATTCTATATCT AGTAGTCTTCAGGATTGGCTGTGGAAGCTCATCTCAAAACAAGAAGAAGAAACTGAAGAAGACAGTTAGCTATGAACAGAAGCTATTTTCAGGAGTCTCA GGGTATCTAGACAAGCCAACTGTTTATGATGTTAACGTGATCATGGAAGCTACCATGGATCTTGATAACTATTACAGGATTAAGGGTTCGGTTTATCGAG CGAACATCGAAGGAAATATCTTGGCAGTTAAGAAGATGAAAGAAGCAACTGAAGAGATTCAGATTCTGCAGAAAGTCAACCATGCTAACCTGGTCAAGCT GATGGGTGTTTCGTGCGATGCAGAAGAAGGAAGATTGGTCTTCTTGGTCTATGAATATGCAGAAAACGGCTCGCTAGATGATTGGCTGTTCCGAAAATCT GCATCGACATCGAGAACAGAAACTCGATCGTTCCTCGGTTGGAGCAGGAGGCTGCAGATAGCATTAGATGTAGCAAATGGCTTGCAATACTTACATGAAC ATGTTCAGCCGAAAATCGGTCACCGAGACATCAGGAGCAGTAACATACTGCTGGACTCCAGGTTCAGGGCAAAGATTGCAAATTTCTCAGTGGCAAGGTC TATATCGGCAGATTCCATAGCCACAAAAGTTGATGTGTTTGCATTCGGTGTAGTCCTCTTGGAGCTGCTTTCTGGGAAGAAGGCAATGGTTGGTGAGGTT TCACTGTTGGTTAAGGATTTCAAGACTGTCATGGAAGTTTCAGAGAGAAGGGTGGAGAAGTTGCGAAATTGGATGGATCCTTACTTGGAGAACTCGTATC CCATTGATGGTGCTTTGAGCTTGGCAATGCTGGCAATGGCATGTACAGTTGAGAGAGCTTTAGCTAGGCCAAGCATGGCAGAGGTTGTGTTTAACCTCAC TGTTCTTATGCAGTCACCTCCCGATTGGCTGGACGACGAAGCTTGGCCTGAGAAGAAGCTTGACGGGGAAGAGATTCTGCAGATCTGCAGTCCAGTTAGT GCTCGTTGA
AA sequence Show only first row Show all	>Lus10019662 pacid=23139296 polypeptide=Lus10019662 locus=Lus10019662.g ID=Lus10019662.BGIv1.0 annot-version=v1.0 MANNYREFDESINHPVLIPVPGLPVLKRPTNPSAQRRKGSNHNWIIIIIISVSVAVSVISALWILYLVVFRIGCGSSSQNKKKKLKKTVSYEQKLFSGVS GYLDKPTVYDVNVIMEATMDLDNYYRIKGSVYRANIEGNILAVKKMKEATEEIQILQKVNHANLVKLMGVSCDAEEGRLVFLVYEYAENGSLDDWLFRKS ASTSRTETRSFLGWSRRLQIALDVANGLQYLHEHVQPKIGHRDIRSSNILLDSRFRAKIANFSVARSISADSIATKVDVFAFGVVLLELLSGKKAMVGEV SLLVKDFKTVMEVSERRVEKLRNWMDPYLENSYPIDGALSLAMLAMACTVERALARPSMAEVVFNLTVLMQSPPDWLDDEAWPEKKLDGEEILQICSPVS AR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33580			Protein kinase superfamily pro...		Lus10019662 [exp]	0	1
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10006446 [exp]	2.0	0.9278
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023035 [exp]	5.8	0.9248
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10007765 [exp]	11.4	0.8930
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10006245 [exp]	11.7	0.8750
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	15.8	0.9000
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016752 [exp]	16.3	0.8852
AT4G04750			Major facilitator superfamily ...		Lus10000924 [exp]	17.2	0.8881
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	20.3	0.9134
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10037295 [exp]	23.6	0.8360
AT2G24700	B3	REM10	Transcriptional factor B3 fami...		Lus10026264 [exp]	24.8	0.8635

Compare expression of checked genes

Lus10019662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.