Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23790 297 / 5e-100 Protein of unknown function (DUF607) (.1) AT4G36820 290 / 6e-97 Protein of unknown function (DUF607) (.1) AT5G66650 261 / 6e-86 Protein of unknown function (DUF607) (.1) AT5G42610 224 / 4e-72 Protein of unknown function (DUF607) (.1) AT1G09575 164 / 2e-48 Protein of unknown function (DUF607) (.1) AT1G57610 158 / 2e-46 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000580 [exp] 538 / 0 AT2G23790 314 / 1e-106 Protein of unknown function (DUF607) (.1) Lus10022496 [exp] 379 / 9e-132 AT2G23790 371 / 2e-128 Protein of unknown function (DUF607) (.1) Lus10016799 [exp] 372 / 5e-129 AT2G23790 362 / 1e-124 Protein of unknown function (DUF607) (.1) Lus10010793 [exp] 235 / 2e-75 AT5G42610 270 / 2e-89 Protein of unknown function (DUF607) (.1) Lus10016305 [exp] 219 / 2e-69 AT2G23790 264 / 1e-86 Protein of unknown function (DUF607) (.1) Lus10034435 [exp] 171 / 1e-50 AT1G57610 335 / 6e-115 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10019127 [exp] 125 / 6e-34 AT1G57610 229 / 2e-75 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10005312 [exp] 86 / 2e-21 AT5G66650 70 / 5e-16 Protein of unknown function (DUF607) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G031400 [exp] 308 / 4e-104 AT2G23790 333 / 1e-113 Protein of unknown function (DUF607) (.1) Potri.005G127800 [exp] 291 / 2e-97 AT2G23790 335 / 2e-114 Protein of unknown function (DUF607) (.1) Potri.002G133400 [exp] 237 / 2e-76 AT2G23790 290 / 1e-96 Protein of unknown function (DUF607) (.1) Potri.014G041000 [exp] 232 / 3e-74 AT5G42610 288 / 3e-96 Protein of unknown function (DUF607) (.1) Potri.019G133400 [exp] 156 / 3e-45 AT1G09575 317 / 3e-108 Protein of unknown function (DUF607) (.1) Potri.013G161300 [exp] 156 / 5e-45 AT1G09575 316 / 8e-108 Protein of unknown function (DUF607) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04678 [flax] [poplar] MCU Mitochondrial calcium uniporter
Representative CDS sequence Show only first row Show all	>Lus10019663 pacid=23139200 polypeptide=Lus10019663 locus=Lus10019663.g ID=Lus10019663.BGIv1.0 annot-version=v1.0 ATGGCGTCCAAGAAATCCCTAGCTGATCTTCTCCTCAAGCTCCCCAGATCATCGACGATCCAATCCCTAACCAGCCGTCGGATCCCTCCGTACCGGAGTA AGGCCAGCATCGCTCCCGATCCAGGAGACAGCTCTGTGATCCGTCGGTTGCTCACGACGGAGAAGCTCCGGGAGTTCGGCGTCGGCAGGGATCGGATCCG ATTAGATGGCCTCCGACCTCCTCCGATCGAGAAACCGGAGCCGGATGTGGACGAGGTGGTAACGGTCGACGACGCGAGGAAGCTGCTCCGGGTGGCGCGG CTGGAGACGGTGAAATCGAGGCTGAATGACTCGGCGGGAAGAGATTGGATGCTACGATCGGAGTTCTTCAGGATCTGCGGGGAAGTGTGTTCGGATCCGG AGGAAGGGAGTCGGATCGCCCGGACGCTTGACGAGTCCGGAACCGTTCTTGTATTGGGAGATGCGGTGTTCCTCAAACCGAAACAGGTTGTCAAAGCCAT CGGAGGACTGATCCCTTTCCCAGCAACGAACCCAAACGACCCAAGAAAGAAAGAATTCGAACAGCTACAACAGCAGAAATCATCGATCGACGAGAAGGCA AGCGCCCAAGTCCGCCGAGAGCTATGGGGAGGACTGGCTTTCCTAATTGCCCAAACGGCAGGGTTCATGAGGCTAACCTTCTGGGAGCTCTCGTGGGACG TGATGGAGCCTATTTGCTTTTACGTCACCTCGATGTACGTGATGGCCGGGTACGGTTTCTTCCTTAGAACGTCCAGGGAGCCGACGTTCGAAGGGTTCTT CGAGAGCCGGTTCCGGGCTAAGCAGAAGAAGTTGATGAAAGCTCGCAACTTCGATCTCAAGAGATATGACGAGCTTAGAAAGATTTGTCACCCGTTTTCG GAGGACGAGCAAGGACATGGGTTTTTGTTCTCGGGTAGTAAGTAA
AA sequence Show only first row Show all	>Lus10019663 pacid=23139200 polypeptide=Lus10019663 locus=Lus10019663.g ID=Lus10019663.BGIv1.0 annot-version=v1.0 MASKKSLADLLLKLPRSSTIQSLTSRRIPPYRSKASIAPDPGDSSVIRRLLTTEKLREFGVGRDRIRLDGLRPPPIEKPEPDVDEVVTVDDARKLLRVAR LETVKSRLNDSAGRDWMLRSEFFRICGEVCSDPEEGSRIARTLDESGTVLVLGDAVFLKPKQVVKAIGGLIPFPATNPNDPRKKEFEQLQQQKSSIDEKA SAQVRRELWGGLAFLIAQTAGFMRLTFWELSWDVMEPICFYVTSMYVMAGYGFFLRTSREPTFEGFFESRFRAKQKKLMKARNFDLKRYDELRKICHPFS EDEQGHGFLFSGSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	0	1
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	2.6	0.9244
AT1G07040			unknown protein		Lus10013272 [exp]	2.8	0.9117
AT5G35460			unknown protein		Lus10021569 [exp]	3.2	0.8878
					Lus10037807 [exp]	4.6	0.8692
AT1G13750			Purple acid phosphatases super...		Lus10036903 [exp]	6.6	0.8528
AT4G15563			unknown protein		Lus10012807 [exp]	6.7	0.8911
AT3G18620			DHHC-type zinc finger family p...		Lus10016564 [exp]	9.2	0.8656
AT1G07040			unknown protein		Lus10030795 [exp]	11.5	0.8770
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10010994 [exp]	11.8	0.8735
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Lus10007764 [exp]	14.1	0.8693

Compare expression of checked genes

Lus10019663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.