Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39770 474 / 5e-169 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G22190 464 / 4e-165 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G10100 463 / 2e-164 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G65140 461 / 2e-163 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G35910 428 / 1e-150 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G78090 408 / 1e-142 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT5G51460 377 / 3e-130 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT1G22210 373 / 1e-129 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G22590 347 / 1e-118 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G12430 343 / 3e-117 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000687 [exp] 544 / 0 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10027208 [exp] 391 / 6e-136 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10031146 [exp] 381 / 5e-132 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10031723 [exp] 372 / 2e-128 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10024607 [exp] 371 / 7e-128 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032244 [exp] 369 / 6e-127 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10038921 [exp] 370 / 8e-127 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10019010 [exp] 315 / 2e-106 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10039339 [exp] 313 / 1e-105 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G077200 [exp] 520 / 0 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.007G090900 [exp] 520 / 0 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G094500 [exp] 469 / 8e-167 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.012G126100 [exp] 374 / 5e-129 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.015G126900 [exp] 372 / 2e-128 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.001G120500 [exp] 365 / 1e-125 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G112400 [exp] 361 / 4e-124 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.012G001000 [exp] 346 / 2e-118 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G020300 [exp] 344 / 1e-117 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.005G166700 [exp] 316 / 2e-107 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Lus10019666 pacid=23139231 polypeptide=Lus10019666 locus=Lus10019666.g ID=Lus10019666.BGIv1.0 annot-version=v1.0 ATGACGAAGAAGAAGCTTCTGCTGGAGAATCTGGAAATCAACGGTGGTGGCGGAGGAGCGAGGATCAATTCGTGGGTAGATTCGATGAGGGCTTCGTCCC CGACCCGTCTGAGATCGAATTCGAAATCGGAAGAGCAGCAGCAGGGGTTTCAGTGGCAGGAGGAGCAGTTTCTTCATCTTCCGTCGGCTCTGGATTCTTT CGATGAGATTATCGAAGCTTCGCAGGGGAAGCAAATCGTCATGTTTCTGGACTACGACGGCACTCTTTCTCCCATTGTCGACGATCCTGATCGAGCTTTC ATGTCCAAGAAGATGAGAACTACGGTTAGAAGACTCGCTAGATGCTTTCCTACTGCCATAGTTAGTGGAAGATGCAGAGACAAGGTGTACAACTTTGTAA GGTTAGCGGAGCTTTACTATGCCGGAAGCCACGGAATGGACATCAAGGGGCCGAAGAAAGGGTCAAAGTACACGAAAGGAGTCGAGCCAGTGATCTGTCA GCCGGCAAGCGAGTTCCTCCCCATGATCGACGAAGTATTCAAAGAGCTGATCGAGAAAACCAAATCGACCCCTGGAGCGAAAGTTGAGAACAACAAATTT TGCGTTTCGGTCCATTTCCGGTGTGTCGAGGAGAAGATGTGGGGCGAGGTGGCGGAAGCCGTTAAGTCGGTTTTGAAAAAGTACCCCAAACTTAGACTCT CGCACGGACGAAAGGTGTTGGAAATCCGACCAACCATCAAGTGGGACAAAGGAAAGGCTCTTGAATTTTTGTTGGAGTCTTTGGGATTTGCCAACTGTAC CGATGTTTTTCCTATTTATATCGGAGATGATCGAACAGACGAGGATGCATTTAAAGTATTAAAAAAAAGAGGGCAAGGATTTGGGATTCTCGTGTCCAAA GTTCCAAAAGAAACCAATGCTTCTTATGCCCTACAAGAACCCACTGAGGTTATGGACTTCTTGCAAAGATTGGTCGATTGGAAAAGGCGGGATTTCCAAA GGCAATCCAGGATGTAG
AA sequence Show only first row Show all	>Lus10019666 pacid=23139231 polypeptide=Lus10019666 locus=Lus10019666.g ID=Lus10019666.BGIv1.0 annot-version=v1.0 MTKKKLLLENLEINGGGGGARINSWVDSMRASSPTRLRSNSKSEEQQQGFQWQEEQFLHLPSALDSFDEIIEASQGKQIVMFLDYDGTLSPIVDDPDRAF MSKKMRTTVRRLARCFPTAIVSGRCRDKVYNFVRLAELYYAGSHGMDIKGPKKGSKYTKGVEPVICQPASEFLPMIDEVFKELIEKTKSTPGAKVENNKF CVSVHFRCVEEKMWGEVAEAVKSVLKKYPKLRLSHGRKVLEIRPTIKWDKGKALEFLLESLGFANCTDVFPIYIGDDRTDEDAFKVLKKRGQGFGILVSK VPKETNASYALQEPTEVMDFLQRLVDWKRRDFQRQSRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65140		TPPJ	trehalose-6-phosphate phosphat...		Lus10019666 [exp]	0	1
AT5G40670			PQ-loop repeat family protein ...		Lus10032114 [exp]	93.9	0.8311
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10028030 [exp]	167.1	0.8153
					Lus10033739 [exp]	189.0	0.7998
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10030799 [exp]	211.2	0.7929
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10011786 [exp]	239.6	0.8010
AT4G16144		AMSH3	associated molecule with the S...		Lus10036454 [exp]	249.9	0.7977

Compare expression of checked genes

Lus10019666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.