Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22180 89 / 2e-20 hydroxyproline-rich glycoprotein family protein (.1) AT2G27080 81 / 1e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G21130 81 / 1e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G39745 49 / 8e-07 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000688 [exp] 457 / 8e-164 AT2G22180 98 / 1e-23 hydroxyproline-rich glycoprotein family protein (.1) Lus10016800 [exp] 222 / 1e-71 AT2G22180 88 / 4e-20 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G077100 [exp] 109 / 3e-28 AT2G22180 111 / 8e-29 hydroxyproline-rich glycoprotein family protein (.1) Potri.005G166600 [exp] 91 / 2e-21 AT2G27080 114 / 2e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.004G197600 [exp] 71 / 3e-14 AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.009G158900 [exp] 71 / 8e-14 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.013G135800 [exp] 44 / 6e-05 AT1G65690 112 / 4e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019667 pacid=23139288 polypeptide=Lus10019667 locus=Lus10019667.g ID=Lus10019667.BGIv1.0 annot-version=v1.0 ATGGAGGAGCGGGCCTCACCAGTCGCGGCCGCGATCCACCCTCTTCCTATCACCACCACCACCACCACCGCTGCTGATGCGGTCCCTCCTCTACGGAGGG CACCAAGCAGTAGTTACAGTAATATCCCTTCTCAGGCACCTTATCATCCACGTAAGATCTCCAAAGACGTTCCTTCATTCTCCTTCAAAGGCCAACCAAA TACCTACATCGTCCAGATCCCTAAAGACCAGATCTTCAGCGTCCCACCGCCGGAGCATGCAGAGATCGTGGAGCGGTACCGTGAGGAGAAGAACTCGGGC AAGGGCTCTACTGGCAATGGATGTTGTTCTTCTCGTTGCTTGGCCTACACGTTATGTGTTTTCATCCTGGTCGGTGCAATTACTGGGATAAGCATCGGTG TTAAGCACGCAATAACGAAGCCAAAACTCCCTATAATCAAGATTAAGAGTTTCAATGTGAAGAACAGTGGTGGAAAGTTGGCGCAATTCGATGTCAAGAT GATGGTGAGAAATGATGGGAGGATGCACATTTCTCCCGACGGAAATAGTGAAGCCAGCCTTATGTATAAAACGACCGAGATCGGGTTGGGTAGGTTTCCG GGGTTGAGAATCGGGTCAGGCGAATCGAAATTGGTTTCCTTGCGGCTCAAGGCATCGAGGAAAAAGAAGTTTCCCAAGGCGGTTAAGGCTAGCATGGCGG ATAAAAAGGGGAAGAAACCTATCTTCATTGAATTGGTTATGAGGATGTCGGTCGTGATGAGTGCATCGGGTGTCAAGTCACAGAGCAAAGAGATCGATGT AAATTGTAAGTTACGAGTTAACTCGTTGGGCTCGAATAAAGGCATTATGTCACAAAAATGTCAACTCAATTTTTTGTAG
AA sequence Show only first row Show all	>Lus10019667 pacid=23139288 polypeptide=Lus10019667 locus=Lus10019667.g ID=Lus10019667.BGIv1.0 annot-version=v1.0 MEERASPVAAAIHPLPITTTTTTAADAVPPLRRAPSSSYSNIPSQAPYHPRKISKDVPSFSFKGQPNTYIVQIPKDQIFSVPPPEHAEIVERYREEKNSG KGSTGNGCCSSRCLAYTLCVFILVGAITGISIGVKHAITKPKLPIIKIKSFNVKNSGGKLAQFDVKMMVRNDGRMHISPDGNSEASLMYKTTEIGLGRFP GLRIGSGESKLVSLRLKASRKKKFPKAVKASMADKKGKKPIFIELVMRMSVVMSASGVKSQSKEIDVNCKLRVNSLGSNKGIMSQKCQLNFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22180			hydroxyproline-rich glycoprote...		Lus10019667 [exp]	0	1
AT4G23690			Disease resistance-responsive ...		Lus10028750 [exp]	4.0	0.7416
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	4.0	0.8490
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	5.7	0.8226
AT3G07870			F-box and associated interacti...		Lus10012356 [exp]	6.0	0.7700
					Lus10000085 [exp]	6.5	0.7463
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	6.9	0.8226
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	8.0	0.8226
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	8.9	0.8226
					Lus10032915 [exp]	9.2	0.8073
					Lus10013881 [exp]	9.8	0.8223

Compare expression of checked genes

Lus10019667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.