Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13830 82 / 6e-20 J20 DNAJ-like 20 (.1.2) AT2G22360 71 / 9e-15 DNAJ heat shock family protein (.1) AT4G39960 70 / 2e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G08910 64 / 1e-12 DNAJ heat shock family protein (.1) AT1G80030 63 / 3e-12 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT4G28480 63 / 3e-12 DNAJ heat shock family protein (.1.2) AT2G33735 60 / 3e-12 Chaperone DnaJ-domain superfamily protein (.1) AT1G10350 62 / 7e-12 DNAJ heat shock family protein (.1) AT5G59610 61 / 1e-11 Chaperone DnaJ-domain superfamily protein (.1.2) AT2G20560 61 / 1e-11 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000689 [exp] 263 / 7e-92 AT4G13830 83 / 2e-20 DNAJ-like 20 (.1.2) Lus10019669 [exp] 236 / 4e-81 AT4G13830 76 / 9e-18 DNAJ-like 20 (.1.2) Lus10000690 [exp] 229 / 3e-78 AT4G13830 72 / 2e-16 DNAJ-like 20 (.1.2) Lus10002355 [exp] 79 / 2e-18 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10002356 [exp] 78 / 3e-18 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10003150 [exp] 77 / 5e-18 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10016637 [exp] 73 / 3e-16 AT4G13830 187 / 3e-60 DNAJ-like 20 (.1.2) Lus10017263 [exp] 71 / 7e-16 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10022550 [exp] 71 / 3e-15 AT4G13830 181 / 6e-58 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G078801 [exp] 144 / 8e-45 AT4G13830 88 / 4e-22 DNAJ-like 20 (.1.2) Potri.007G088900 [exp] 140 / 4e-43 AT4G13830 91 / 3e-23 DNAJ-like 20 (.1.2) Potri.017G058400 [exp] 74 / 4e-17 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.001G319100 [exp] 74 / 5e-17 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.005G160200 [exp] 74 / 6e-16 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.007G094900 [exp] 70 / 1e-14 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 67 / 2e-13 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.004G172300 [exp] 62 / 7e-13 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G001301 [exp] 62 / 1e-12 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G246700 [exp] 64 / 2e-12 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10019668 pacid=23139213 polypeptide=Lus10019668 locus=Lus10019668.g ID=Lus10019668.BGIv1.0 annot-version=v1.0 ATGGTAGTTCTTAGCCTTAATCTCAATTCCACCCACATCCTCAAACCCTTTCTATCAACCCATCAAACCCACAAAAGGTCACATCCCAAGAGTCACAAAA CAATCTCTTGCCAAGCCACCAAAAAAAAGACCAATTACTATCAAGTCCTCTCACTTTCATCGGAGAATGCGGGCCCCGATGAGATCAAGAAAGCGTACCG GAACATGGCCCGAAAGTACCACCCCGACGTGAGACCCGAAGAAGATTCGACTAGTCGGTTCGTGGAGATAAGGGAGGCTTACGAGACCCTGTCTGACCCG GGGTCTCGTTGGGTATACGACTATGAACTTAGCATGGTTAACTCAATCGGGTTCGGATTTGGGACCGAGTCGTCGAGTTGGAGTGGCTCCAAGGACGTGT GGGAAATGCAGCTCCATGGCTTGAAAGAGAAATCCCGAGTCAGGATGGAAAGGAGGAGTTCTTAA
AA sequence Show only first row Show all	>Lus10019668 pacid=23139213 polypeptide=Lus10019668 locus=Lus10019668.g ID=Lus10019668.BGIv1.0 annot-version=v1.0 MVVLSLNLNSTHILKPFLSTHQTHKRSHPKSHKTISCQATKKKTNYYQVLSLSSENAGPDEIKKAYRNMARKYHPDVRPEEDSTSRFVEIREAYETLSDP GSRWVYDYELSMVNSIGFGFGTESSSWSGSKDVWEMQLHGLKEKSRVRMERRSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019668 [exp]	0	1
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019178 [exp]	1.0	0.8134
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014002 [exp]	2.4	0.7512
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037090 [exp]	3.7	0.7271
AT4G37440			unknown protein		Lus10019305 [exp]	4.0	0.7476
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10002176 [exp]	12.4	0.8018
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033483 [exp]	15.5	0.7247
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	21.9	0.7348
AT3G53810			Concanavalin A-like lectin pro...		Lus10001562 [exp]	24.2	0.6631
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	27.3	0.7201
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10006357 [exp]	30.0	0.7279

Compare expression of checked genes

Lus10019668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.