Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13830 77 / 6e-18 J20 DNAJ-like 20 (.1.2) AT3G13310 59 / 2e-11 Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 60 / 5e-11 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G59980 59 / 6e-11 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT2G20560 59 / 8e-11 DNAJ heat shock family protein (.1) AT3G08910 58 / 2e-10 DNAJ heat shock family protein (.1) AT2G22360 57 / 2e-10 DNAJ heat shock family protein (.1) AT4G28480 57 / 4e-10 DNAJ heat shock family protein (.1.2) AT1G80030 57 / 4e-10 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT1G10350 56 / 6e-10 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000690 [exp] 281 / 7e-99 AT4G13830 72 / 2e-16 DNAJ-like 20 (.1.2) Lus10019668 [exp] 236 / 4e-81 AT4G13830 82 / 6e-20 DNAJ-like 20 (.1.2) Lus10000689 [exp] 212 / 9e-72 AT4G13830 83 / 2e-20 DNAJ-like 20 (.1.2) Lus10002356 [exp] 81 / 2e-19 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10002355 [exp] 77 / 5e-18 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10003150 [exp] 76 / 2e-17 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10017263 [exp] 69 / 3e-15 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10016637 [exp] 68 / 1e-14 AT4G13830 187 / 3e-60 DNAJ-like 20 (.1.2) Lus10003149 [exp] 67 / 6e-14 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088900 [exp] 129 / 6e-39 AT4G13830 91 / 3e-23 DNAJ-like 20 (.1.2) Potri.005G078801 [exp] 124 / 1e-36 AT4G13830 88 / 4e-22 DNAJ-like 20 (.1.2) Potri.001G319100 [exp] 74 / 9e-17 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.017G058400 [exp] 73 / 2e-16 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.006G001301 [exp] 67 / 2e-14 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G160200 [exp] 67 / 8e-14 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.007G094900 [exp] 62 / 4e-12 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 62 / 5e-12 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.002G020700 [exp] 61 / 5e-12 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G107600 [exp] 59 / 9e-12 AT3G13310 109 / 4e-31 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10019669 pacid=23139269 polypeptide=Lus10019669 locus=Lus10019669.g ID=Lus10019669.BGIv1.0 annot-version=v1.0 ATGGTTGTAATTAGCCTTAATTTCAACTCCACCCACCTTCCCAAACCCTTTATACCAACTCATCAAACCCACAAAAGATTCAATCCCAACACAATCTCTT GCCAAGCCACCAAGACCAATTACTATCAAGTCCTCTCACTCTCATCGGAGAACGTGGGCCCCGACGAGATCAAGAAGGCATATCGGACCATGGCGCGGAT GTACCACCCCGATGTCCGACCTGGAGAGGATTCGGCCCGTCTGTTCGTGGAGATCCGAGAGGCTTACGAGACCCTGTCCGACCCGGGGTCTCGCCGGGTT TACGACTACGAGCTGAGCATGGTCAACTCAATTGGGACTGGGTTTGGATCTAGGCCGAACCGGGGTGGCTCCAAGGATGTGTGGGAAATGCAGCTTGATG GATTGAAAGAGCGATCTCGAGCCAGGATGGAAAGAAAGAGTACTTAA
AA sequence Show only first row Show all	>Lus10019669 pacid=23139269 polypeptide=Lus10019669 locus=Lus10019669.g ID=Lus10019669.BGIv1.0 annot-version=v1.0 MVVISLNFNSTHLPKPFIPTHQTHKRFNPNTISCQATKTNYYQVLSLSSENVGPDEIKKAYRTMARMYHPDVRPGEDSARLFVEIREAYETLSDPGSRRV YDYELSMVNSIGTGFGSRPNRGGSKDVWEMQLDGLKERSRARMERKST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019669 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	12.3	0.8690
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032416 [exp]	20.1	0.8351
					Lus10028488 [exp]	24.7	0.8342
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10012816 [exp]	30.4	0.7234
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10003858 [exp]	31.4	0.8224
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10041355 [exp]	34.4	0.8190
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10007777 [exp]	36.3	0.8174
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033336 [exp]	39.7	0.8169
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10003288 [exp]	41.9	0.7582
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10032079 [exp]	48.7	0.7836

Compare expression of checked genes

Lus10019669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.