Plant FIBer expression Database

Lus10019670 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G19900 234 / 6e-71 PRLI-interacting factor, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000691
[exp]
532 / 0 AT5G19900 304 / 4e-98 PRLI-interacting factor, putative (.1)
Lus10000189
[exp]
337 / 1e-113 AT5G19900 179 / 5e-53 PRLI-interacting factor, putative (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G214300
[exp]
259 / 2e-80 AT5G19900 294 / 3e-94 PRLI-interacting factor, putative (.1)
Potri.001G011800
[exp]
256 / 2e-80 AT5G19900 281 / 2e-90 PRLI-interacting factor, putative (.1)
PFAM info
Representative CDS sequence
>Lus10019670 pacid=23139220 polypeptide=Lus10019670 locus=Lus10019670.g ID=Lus10019670.BGIv1.0 annot-version=v1.0
ATGAACGATCAGGCGCAGCAGATGATGATCGGAGGCGGCGGCGGCGGCGGGGGGGGGGGGCAGCGCGGTGGTGGTGTTCAGCCGCCGATGATGAATCCAC
TCCCGCCCGGTCCTCCTCCTCCGCCGGGTTTGATGAGCACGGTCCAGTCACAAATGATGAACGCTAACAACCAGGCTCAGATGCTGAGCGGTCATAGTCA
GGCTATGAACCAGCAGCCGATGATGATGGCGGCGATGAATAATCAGAGAGTGTACAAGCCATGGATGCAGCAGAATCAGCTGAATCAGAACCAGAACCAG
AACCAGCATCCTCCTGGAAAGTTTGGTTACTTTGTGCCGTCCAAGCCCAGGACGAATAACAACAACAACAACAACAATTGGAAGGGTAAGAATAAGGATA
GAAGAATGGGGAATAATAATAATAAGCTCAACACCGGCGGCCTTGGTGGCCCCGGTGGAGGAGTCGGAGTCGGCGGTGGTTTGATAACCGTACCCGGTTC
CGGCGCTGTTATTGTGGGTGGCGGCATCGGCGGCTACATGCCGCCAAGTTTGAATGAGTTGCAGAACCAGAACAGGATGAAAACGCAGAAGCATTACCAC
CATTCCAAGAAGAAGTACAACAATCGTTATGCTCCTTATGCTCCTAGGAATAGTACTTCGTTCATTATCCGTGCTAAGAAATCTGGAGGGATTGCTTCCC
TGGTGTCTCCTTGTCCTGTGACTCCTGCAGTGCTGCCGACTCCTGATATTCATATCCAACCAATGGAGGTGCTTGGTGATGTGGCTAAGGAGGAATGGGG
GGTTGATGGTTATGGATCGATGAAGGGTTTGATTAGGTTGAGGTCTCCTGGACATGAAATGGAAGGAGGGAACGATGAGGATGAAGATGACGAGAGTAGC
GGGTCGAGTGAGAGTGATGTTGAGGAGCATGTGGAAGTGGAGAGGCGGTTGGACCACGATTTGAGCAGGTTTGAGATGATTTATCCGAGTAATGCGGGAG
GAGGGGAGTATAGTTTCAATAATGTTTTAGAGAACAGGGTAGATGATCAGGATACGCACATTGCACATTTAGAGGAAGAGAATTTGACTCTGAAGGAGAG
GCTGTTTTTGGTGGAGACCGAGTTGGACAATCTTAGGAGGAGGTTGCTGCTCTTGGAGAGGCAGCAGAATGGTAGAGGAGGTATGGAGGAAGTTAACGAA
GGGATTGTCGAAAATGTGTCGGAGAATGATATGAACGAGAACGAAAGCAATGGAGAGTCGGATGGAGCTGGGGACAGTAAGATCGATGTGAACAAAGAAC
ACTCAAATGAGGATAGTGAAAATGTGAACCATGTTAAGCTAGAAAGTAAAGACATTTCTATGCCAGAGTTTACACATAGTGATGAAGATGTCGAAAAGAA
GGAGCTCAAGTTTGATGCTTTAGTTGCTAGCAAGGAAGAACCGAGGATTAATGTGATGCCAGAAGAGGTAACTGATAAGAGTGTTGCAAATGAAGATATC
GTAGAGGACAAAATGGATGGTGGAACAGGACAAGTGCAGGTATAA
AA sequence
>Lus10019670 pacid=23139220 polypeptide=Lus10019670 locus=Lus10019670.g ID=Lus10019670.BGIv1.0 annot-version=v1.0
MNDQAQQMMIGGGGGGGGGGQRGGGVQPPMMNPLPPGPPPPPGLMSTVQSQMMNANNQAQMLSGHSQAMNQQPMMMAAMNNQRVYKPWMQQNQLNQNQNQ
NQHPPGKFGYFVPSKPRTNNNNNNNNWKGKNKDRRMGNNNNKLNTGGLGGPGGGVGVGGGLITVPGSGAVIVGGGIGGYMPPSLNELQNQNRMKTQKHYH
HSKKKYNNRYAPYAPRNSTSFIIRAKKSGGIASLVSPCPVTPAVLPTPDIHIQPMEVLGDVAKEEWGVDGYGSMKGLIRLRSPGHEMEGGNDEDEDDESS
GSSESDVEEHVEVERRLDHDLSRFEMIYPSNAGGGEYSFNNVLENRVDDQDTHIAHLEEENLTLKERLFLVETELDNLRRRLLLLERQQNGRGGMEEVNE
GIVENVSENDMNENESNGESDGAGDSKIDVNKEHSNEDSENVNHVKLESKDISMPEFTHSDEDVEKKELKFDALVASKEEPRINVMPEEVTDKSVANEDI
VEDKMDGGTGQVQV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G19900 PRLI-interacting factor, putat... Lus10019670
[exp]
0 1
AT5G19900 PRLI-interacting factor, putat... Lus10000189
[exp]
1.0 0.9435
AT3G24050 GATA GATA1 GATA transcription factor 1 (.... Lus10011762
[exp]
1.7 0.9019
AT5G19900 PRLI-interacting factor, putat... Lus10000691
[exp]
2.0 0.9099
AT2G39840 TOPP4 type one serine/threonine prot... Lus10030163
[exp]
3.2 0.8621
AT1G56423 unknown protein Lus10010918
[exp]
4.0 0.8549
AT3G24490 Trihelix Alcohol dehydrogenase transcri... Lus10017725
[exp]
8.8 0.8581
AT2G37550 ASP1, AGD7 yeast pde1 suppressor 1, ARF-G... Lus10003977
[exp]
8.8 0.8743
AT2G36900 ATMEMB11, MEMB1... membrin 11 (.1.2) Lus10005690
[exp]
9.4 0.8610
AT1G10320 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10010687
[exp]
10.2 0.8505
AT5G42300 UBL5 ubiquitin-like protein 5 (.1) Lus10002228
[exp]
10.6 0.8762

Lus10019670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.