Plant FIBer expression Database

Lus10019671 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22240 427 / 3e-148 ATIPS2, ATMIPS2 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, INOSITOL 3-PHOSPHATE SYNTHASE 2, myo-inositol-1-phosphate synthase 2 (.1.2)
AT4G39800 425 / 3e-145 ATIPS1, ATMIPS1, MI-1-P SYNTHASE, MI-1-PSYNTHASE D-myo-Inositol 3-Phosphate Synthase 1, INOSITOL 3-PHOSPHATE SYNTHASE 1, myo-inositol-1-phosphate synthase 1 (.1)
AT5G10170 417 / 3e-142 ATMIPS3 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, myo-inositol-1-phosphate synthase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000692
[exp]
445 / 5e-153 AT2G22240 976 / 0.0 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, INOSITOL 3-PHOSPHATE SYNTHASE 2, myo-inositol-1-phosphate synthase 2 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G089000
[exp]
430 / 3e-147 AT2G22240 975 / 0.0 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, INOSITOL 3-PHOSPHATE SYNTHASE 2, myo-inositol-1-phosphate synthase 2 (.1.2)
Potri.005G078700
[exp]
427 / 2e-146 AT5G10170 976 / 0.0 MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, myo-inositol-1-phosphate synthase 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0139 GADPH_aa-bio_dh PF01658 Inos-1-P_synth Myo-inositol-1-phosphate synthase
CL0063 NADP_Rossmann PF07994 NAD_binding_5 Myo-inositol-1-phosphate synthase
Representative CDS sequence
>Lus10019671 pacid=23139283 polypeptide=Lus10019671 locus=Lus10019671.g ID=Lus10019671.BGIv1.0 annot-version=v1.0
ATGTTCATTGAGAAGTTTCAGGTTGAGTCTCCGAATGTGAAGTACTCCGAGACTGAGATACAGTCCGTGTACAACTACGAGACCACTGAGCTTGTTCATG
AGAGCCGTAACGGCTCTTACCAGTGGGTCGTTAAGCCCAAATCCGTGAAATACGAGTTCAAAACTGATGTTCAAGTCCCCAAACTCGGGGTTTTGCTCGT
TGGATGGGGTGGAAACAACGGCTCGACCCTCACTGGTGGTGTCATTGCTAACCGAGAAGGGATTTCATGGGCGACCAAGGATAAGGTGCAGCAAGCAAAC
TACTTTGGGTCACTCACCCAAGCATCAGCTATCCGAGTTGGGTCTTACAATGGAGAGGAGATCTATGCTCCTTTCAAGAGCCTCCTCCCTATGGTGAACC
CAGATGAGATAGTGTTCGGGGGATGGGACATAAGTGACATGAACTTGGCAGATGCCATGGCAAGGGCAAGAGTGTTGGACATTGATCTGCAGAAGCAGCT
GAGGCCTTACATGGAGTCCATGGTGCCACTCCCTGGTATCTACGACCCTGATTTCATCGCTGCTAACCAAGACTCCCGTTCGAACAACGTCATCAAGACA
TTGTTGTGGGGCTTAACGACACCACAGAGAACCTCCTTGCTGCTGTGGACAGGAACGAGTCTGAGATCTCTCCGTCTACTCTCTATGCATTGGCTTGCAT
CATGGAGAATATCCCTTTCATCAACGGAAGCCCGCAGAACACTTTCGTTCCAGAGGAACAGTTTAATCGGTGGTGATGACTTCAAGAGTGGTCAGACCAA
GATGAAATCAGTCCTTGTTGATTTCCTTGTTGGGGCTGGTATCAAGCCAACATCAATTGTAAGCTACAATCACCTCGGAAACAACGACGGAATGAACCTC
TCAGCACCGCAGACATTCAGGTCTAAGGAGATCTCCAAAAGCAACGTGGTTGATGATATGGTTTCCAGCAATGCCATCCTATATGAGCCTGGTGAACACC
CTGACCATGTTGTGGTCATCAAGTATGTGCCATATGTAGCAGACAGCAAGAGAGCCATGGATGAGTACACTTCAGAGATCTTCCTTGGAGGGACTAACAC
AATTGTGATGCACAACACCTGTGAAGATTCCCTCTTGGCTGCACCAATTATCCTGGATTTGGTTCTTCTTGCTGAGCTCAGCACTAGGATTCAGCTCAAG
GCTGAAGGAGAGGGAAAGTTCCACTCTTTCCACCCTGTTGCTACCATTCTCAGTTACCTTACCAAGGCTCCTCTGGTGCCACCAGGGACTCCAGTGGTGA
ATGCACTGTCAAAGCAGAGGGCAATGCTGGAGAACATCATGAGAGCTTGTGTTGGACTGGCACCTGAGAACAACATGATCTTGGAATACAAGTGA
AA sequence
>Lus10019671 pacid=23139283 polypeptide=Lus10019671 locus=Lus10019671.g ID=Lus10019671.BGIv1.0 annot-version=v1.0
MFIEKFQVESPNVKYSETEIQSVYNYETTELVHESRNGSYQWVVKPKSVKYEFKTDVQVPKLGVLLVGWGGNNGSTLTGGVIANREGISWATKDKVQQAN
YFGSLTQASAIRVGSYNGEEIYAPFKSLLPMVNPDEIVFGGWDISDMNLADAMARARVLDIDLQKQLRPYMESMVPLPGIYDPDFIAANQDSRSNNVIKT
LLWGLTTPQRTSLLLWTGTSLRSLRLLSMHWLASWRISLSSTEARRTLSFQRNSLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNL
SAPQTFRSKEISKSNVVDDMVSSNAILYEPGEHPDHVVVIKYVPYVADSKRAMDEYTSEIFLGGTNTIVMHNTCEDSLLAAPIILDLVLLAELSTRIQLK
AEGEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENIMRACVGLAPENNMILEYK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G22240 ATIPS2, ATMIPS2 MYO-INOSITOL-1-PHOSTPATE SYNTH... Lus10019671
[exp]
0 1
AT2G22240 ATIPS2, ATMIPS2 MYO-INOSITOL-1-PHOSTPATE SYNTH... Lus10000692
[exp]
1.0 0.9224
AT3G12120 FAD2 fatty acid desaturase 2 (.1.2) Lus10004175
[exp]
3.2 0.8513
AT3G25180 CYP82G1 cytochrome P450, family 82, su... Lus10038203
[exp]
8.9 0.8246
AT1G32900 GBSS1 granule bound starch synthase ... Lus10033245
[exp]
10.4 0.8505
AT1G68570 Major facilitator superfamily ... Lus10041466
[exp]
11.5 0.8419
AT3G55550 Concanavalin A-like lectin pro... Lus10040276
[exp]
12.4 0.7917
AT4G33840 Glycosyl hydrolase family 10 p... Lus10014642
[exp]
18.9 0.8114
AT5G13170 SAG29, SWEET15,... senescence-associated gene 29 ... Lus10015754
[exp]
19.0 0.8061
AT1G64500 Glutaredoxin family protein (.... Lus10003194
[exp]
19.3 0.8161
AT5G43850 ATARD4 RmlC-like cupins superfamily p... Lus10021902
[exp]
22.0 0.8069

Lus10019671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.