Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78955 396 / 4e-133 CAMS1 camelliol C synthase 1 (.1) AT1G78960 390 / 5e-131 ATLUP2 lupeol synthase 2 (.1) AT1G66960 383 / 3e-128 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78970 381 / 2e-127 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G78950 358 / 2e-118 ATLUP3 Terpenoid cyclases family protein (.1) AT5G48010 332 / 2e-108 AtTHAS1, THAS1, THAS, ATPEN4 Arabidopsis thaliana thalianol synthase 1, thalianol synthase 1 (.1.2) AT2G07050 326 / 5e-106 CAS1 cycloartenol synthase 1 (.1) AT3G29255 324 / 8e-106 catalytics;intramolecular transferases (.1) AT1G78500 325 / 1e-105 ATPEN6 Terpenoid cyclases family protein (.1) AT5G36150 321 / 3e-104 ATPEN3 putative pentacyclic triterpene synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013546 [exp] 477 / 1e-164 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 466 / 4e-161 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10019674 [exp] 372 / 1e-128 AT1G78960 577 / 0.0 lupeol synthase 2 (.1) Lus10026079 [exp] 352 / 3e-116 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10016439 [exp] 332 / 7e-110 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10032146 [exp] 315 / 7e-102 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10033355 [exp] 311 / 2e-100 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10014538 [exp] 308 / 3e-99 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10016442 [exp] 276 / 1e-92 AT1G78955 283 / 5e-90 camelliol C synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002400 [exp] 432 / 5e-147 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 427 / 3e-145 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 392 / 2e-131 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.019G079200 [exp] 360 / 5e-124 AT1G78955 548 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 360 / 3e-119 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G001500 [exp] 356 / 1e-117 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 355 / 2e-117 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 353 / 9e-117 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.014G002500 [exp] 345 / 2e-114 AT1G78955 909 / 0.0 camelliol C synthase 1 (.1) Potri.018G148800 [exp] 331 / 6e-108 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10019673 pacid=23139245 polypeptide=Lus10019673 locus=Lus10019673.g ID=Lus10019673.BGIv1.0 annot-version=v1.0 ATGAATGATGAGGAGATAGGTGATGTGTTGAGGAAAGGACATGACTACATAAAAAATTCTCAGGTGAAGAATGACCCTCAAGGTGACTTCAAGAGTATGT GCAGGCACATCTCGAGAGGATCATGGACTTTCTCCCACAAAGATCAAGGATGGCAAGTCTCCGACTGCACTGCAGAAGAAGTGTTGCCTTCTGCTCTCGA AGATGTCGCCTCAACTGGTTGGCGAGCCCTTGGAACCTACTCGACTAGTGAAAATGGAGGCTTATCAGCTTTCGAACCTACTACGGCCTCAAGATGGTTA CAGGTTTTGAACCCAACGGATTTCTACGAGGACAATGTGGTGGAGATCGAGTACGTTGAATGTACAGGATCGGCAATTTGCGCCTTGGTTGAGTTTAAGA AGCTCTACCCAGAGCACAGGAGGAAAGAGATTGACACGTCCATCGAAATTGCGGTAGGATATATAGAAGCCGCACAAACTCGTGAAGGAGGATGGTATGG AAACTGGGGAGTGTGCTTCACTTATGGAACTTGGTTTGCACTCGGAGGCCTAGCAGCCGTGGGGAAGAACGATAACAACTCCTCCTCAGTTCGGCGAGGT GTTGATTTCCTTCTATCGATACAAAAAAGTGATGGCGGGTGGGGAGAGAGCTATCTTTCATGCCCTCACAAGAGTTATGTCCCTCTCGAAGGCAATCGCA AATTGAATTTAGTACAGACAGCATGGGGAATGATGGGTCTGATCCATGGAGGTCAGATGGACAGGGATCGGACTCCATTACACCGTGCTGCGAAGCTGTT GATAAATTCTCAAACGGAAGATGCTGATTTCCCACAGCAGGAACTTACAGGATCTTCGTTGAGGAACTGCCTGCTACATTCTGCTACTTACAGGAACACT TTCACTCTATGGGCTCTAGCCGAATACCGCAACCGTATCAACCAAAAGTAG
AA sequence Show only first row Show all	>Lus10019673 pacid=23139245 polypeptide=Lus10019673 locus=Lus10019673.g ID=Lus10019673.BGIv1.0 annot-version=v1.0 MNDEEIGDVLRKGHDYIKNSQVKNDPQGDFKSMCRHISRGSWTFSHKDQGWQVSDCTAEEVLPSALEDVASTGWRALGTYSTSENGGLSAFEPTTASRWL QVLNPTDFYEDNVVEIEYVECTGSAICALVEFKKLYPEHRRKEIDTSIEIAVGYIEAAQTREGGWYGNWGVCFTYGTWFALGGLAAVGKNDNNSSSVRRG VDFLLSIQKSDGGWGESYLSCPHKSYVPLEGNRKLNLVQTAWGMMGLIHGGQMDRDRTPLHRAAKLLINSQTEDADFPQQELTGSSLRNCLLHSATYRNT FTLWALAEYRNRINQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10019673 [exp]	0	1

Compare expression of checked genes

Lus10019673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.