Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78960 577 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G78970 562 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G78955 561 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78950 548 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G66960 544 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78500 460 / 8e-157 ATPEN6 Terpenoid cyclases family protein (.1) AT5G48010 450 / 6e-153 AtTHAS1, THAS1, THAS, ATPEN4 Arabidopsis thaliana thalianol synthase 1, thalianol synthase 1 (.1.2) AT5G36150 447 / 5e-152 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT4G15370 447 / 6e-152 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1) AT2G07050 446 / 1e-151 CAS1 cycloartenol synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013546 [exp] 657 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 652 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10016439 [exp] 617 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10026079 [exp] 504 / 2e-174 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10033355 [exp] 459 / 2e-156 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10016440 [exp] 455 / 2e-156 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1) Lus10032146 [exp] 436 / 1e-147 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10014538 [exp] 434 / 8e-147 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10025684 [exp] 392 / 6e-131 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002400 [exp] 632 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 631 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 564 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 537 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G001500 [exp] 531 / 0 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 472 / 2e-161 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.014G002500 [exp] 468 / 7e-161 AT1G78955 909 / 0.0 camelliol C synthase 1 (.1) Potri.019G079200 [exp] 454 / 8e-160 AT1G78955 548 / 0.0 camelliol C synthase 1 (.1) Potri.018G148800 [exp] 452 / 1e-153 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.011G085000 [exp] 450 / 6e-153 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10019674 pacid=23139292 polypeptide=Lus10019674 locus=Lus10019674.g ID=Lus10019674.BGIv1.0 annot-version=v1.0 ATGCTGGTGGAGCCTCTACTAACTCGTTGGCCTCTCAACAAGCTCATAAGGGCAAAGGCTCTGGAAGTGACAATGAAGCACATTCATTACGAAGATGAAT GTAGTCACTACATTACCATTGGACGCGTAGAGAAGGTTTTGTGTATGTTGGCATGCTGGGTCGAAGACCCCAATGGCGATTCTTTCCAGAAGCATCTTGC TAGGATTCCAGACTATCTCTGGGTGGCAGAGGATGGAATGAAGATGCAAAGTTTTGGAAGTCAGCAATGGGACACTGGCTTTTCTATCCAGGCATTGATA GCTTGTGCAACGAGTGATGAGGAGATGGGAGATGTTTTAAGGAAAGGACACGATTTCGTTAAAAGTTCCCAGGTGAAGGATGGCCCTCGGGGTGACTTCA AGAGCATGTACAGGCACATCTCCAAAGGATCCTGGACTTTCTCGGATCAAGATCATGGATGGCAAGTATCCGACTGCACCGCTGAAGTTCTCAAATGTTG CCTTCTTCTCTCAAAGATGCCGCCTCAGCTGGTTGGCGAGCCCATGGAACCAACTCGCTTGTTTGACTCTCTCAACATTCTTCTTTCTCTTCAGAGTAAA AATGGAGGTTTGTCAGGTTGGGAGCCTGCTGGAGCTCCAGAATGGTTAGAGCCAGGGCACAGGAGGAAAGAGATTGACAGGTTCATCGAAGGTGCCGTAG AATATCTCGAAGCGGCACAAACTGATGAAGGAGGATGGTACGGAGTGTGGGGAATTTGCTTCACTTATGGAACTTGGTTTGCACTTGTAGGCCTAGCAGC CGTCGGTAAAAGCTATAACAACTCCTCAGTTCGGCGAGGCATTGATTTCCTGCTATCGATACAACAAAGTGATGGCGGGTGGGGAGAGAGCTACCTTTCC TGCCCTCAGAAGAGATATGTCCCTCTTGAAGGCAACCGATCGAATCTGGTACAGACAGCTTGGGCTATGATGGGTCTGATTGATGGAGGGCAGATGGATA GAGATCCGAGTCCAGTACACCGCGCTGCGAAACTGCTGATAAATTCTGAAACAGAAGATGGTGATTTCCCACAGCAGGAACTTACTGGAGCTTTCATGAA GAACTGCATGCAACATTATGGATTGTACAGAAACATTTCCCCCCTGTTGGCTCTAGCCGAATATCGCAAGCGTATCTCTTCCTAG
AA sequence Show only first row Show all	>Lus10019674 pacid=23139292 polypeptide=Lus10019674 locus=Lus10019674.g ID=Lus10019674.BGIv1.0 annot-version=v1.0 MLVEPLLTRWPLNKLIRAKALEVTMKHIHYEDECSHYITIGRVEKVLCMLACWVEDPNGDSFQKHLARIPDYLWVAEDGMKMQSFGSQQWDTGFSIQALI ACATSDEEMGDVLRKGHDFVKSSQVKDGPRGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEVLKCCLLLSKMPPQLVGEPMEPTRLFDSLNILLSLQSK NGGLSGWEPAGAPEWLEPGHRRKEIDRFIEGAVEYLEAAQTDEGGWYGVWGICFTYGTWFALVGLAAVGKSYNNSSVRRGIDFLLSIQQSDGGWGESYLS CPQKRYVPLEGNRSNLVQTAWAMMGLIDGGQMDRDPSPVHRAAKLLINSETEDGDFPQQELTGAFMKNCMQHYGLYRNISPLLALAEYRKRISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10019674 [exp]	0	1
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10005320 [exp]	5.8	0.6151
AT5G08391			Protein of unknown function (D...		Lus10037035 [exp]	8.7	0.6213
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10040313 [exp]	21.3	0.6035
AT1G33530			F-box family protein (.1)		Lus10014984 [exp]	24.5	0.6088
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	34.8	0.5999
					Lus10023587 [exp]	38.1	0.5999
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	41.2	0.5999
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	44.0	0.5999
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	46.7	0.5999
AT2G34320			Polynucleotidyl transferase, r...		Lus10039942 [exp]	49.2	0.5999

Compare expression of checked genes

Lus10019674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.