Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06920 59 / 2e-09 FLA21 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016437 [exp] 689 / 0 AT5G06920 68 / 3e-12 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10039717 [exp] 50 / 2e-06 AT5G06920 192 / 5e-58 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10020296 [exp] 46 / 5e-05 AT5G06920 192 / 2e-57 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10018505 [exp] 45 / 6e-05 AT5G06920 200 / 6e-61 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079500 [exp] 455 / 1e-158 AT5G06920 63 / 1e-10 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Potri.008G128200 [exp] 64 / 6e-11 AT5G40940 174 / 7e-51 putative fasciclin-like arabinogalactan protein 20 (.1) Potri.013G152200 [exp] 51 / 1e-06 AT5G06920 296 / 1e-98 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Potri.017G111600 [exp] 44 / 0.0001 AT5G40940 216 / 2e-66 putative fasciclin-like arabinogalactan protein 20 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019675 pacid=23139212 polypeptide=Lus10019675 locus=Lus10019675.g ID=Lus10019675.BGIv1.0 annot-version=v1.0 ATGGCGATTTCTCAGATCACCACCGCGGCTCTACTGATCCTGATCCTGTGGCTGACAGATCCCACCGTCGGCTTCGAGCAGCAGCCGGCCTCCACCTCTG CCGGTTCTTCGAACGCTCTCTCCCAGCAGTTCCCGCCGGTCAATTCTCCTTTCCCGGCGCCTCCGATGACTCAGCCGCAGCAGCAGCAGCAGAGTGTCGC TGTCGATTCCGACGACCGATCGTTCATCCACACAGCTCTCCTGGCTCCGATCCTTTCTCACCTGGGCTACAACGAGCTTGCCATGGCGGTTCCGTCTCTC TCGTCCGAATCCACCGCCACCGCATGGTCAGGTCCTTCAACTCTGTTCGCTCCTTCCGACGCATCTCTCCATTCTTGCTATTCTTGCTCTGTTCCTAGTC TTCTCCGGGAGCACATAGTCCCAGGCCTGTTCACAATCGATTATCTCCGTAAGCTAGCCTTCGGGACGAAGGTCGAGACTCTGTCTCCAAGCCGATGCGT CACCGTCACCTCCAGTACGATCAAGAACTCCACCGCCTCGTCTAACAATGCCTCCAAAACCTTCGTCGGAGGCGTAGAGATCACTCATCCAGATCTCTTC AACAACGGCTTCCTAGTGATTCATGGAATCCAAGGCTACATCGCTCCTCTCTCGCCGTTCTCCTGCGACGTCGAGCGTCTCAGTTCGCTGATGTTCCCGT TCCAGCAGCCGTCCGATCGCGTCAACCAGATCACTCCGCCGCTCGTCCAGCCGGCCGTTATGCGATTGATGATGCGAGACGCTATCCTCCGACTCCGCAA CAACGGATTCAGCATCCTTGCTCTGGCGTTGCGAGTCAAGTATCCGGAGCTCGTTTCCCTCAGCAACATGACGGTCTTCGCTCTCGACGACTTCTCGATC TTCTCCGGATCGTACTCCTACGTCAGCAGCGTCCGATTCCACATCGTTCCTAACCAGCTATTGAGCTTCGCCGATCTCGAGAGGCTTCCGGTTGGCTGCC AATTGCCGACTCTGGAAACTGGTCAGTATCTTGTCGTGACCACCGCCAGTACCGGTAGCAGTACCTTGTCTCCTCCGGCGCCGATGAGGATCAACTACGT CAGGATCAAGCTTCCAGACGTCATCCGTAACTTGAAGATCGCAGTCCACGGCGTCTACCTTCCCTTCCCCAGGATCCAACCAACTGCCGTCGCCTCTGCT CACAGCTTTGACCAATCACATGTGGACCCTGCTTCCGCCTGTGCTGCTCTATCCGAAGACGGAAGCTGCGCTATGGTCCCTGTTCCTCCAGTGAGGGCAA ATCTGGAGATGGAAGATCACCATGGCCTGTAG
AA sequence Show only first row Show all	>Lus10019675 pacid=23139212 polypeptide=Lus10019675 locus=Lus10019675.g ID=Lus10019675.BGIv1.0 annot-version=v1.0 MAISQITTAALLILILWLTDPTVGFEQQPASTSAGSSNALSQQFPPVNSPFPAPPMTQPQQQQQSVAVDSDDRSFIHTALLAPILSHLGYNELAMAVPSL SSESTATAWSGPSTLFAPSDASLHSCYSCSVPSLLREHIVPGLFTIDYLRKLAFGTKVETLSPSRCVTVTSSTIKNSTASSNNASKTFVGGVEITHPDLF NNGFLVIHGIQGYIAPLSPFSCDVERLSSLMFPFQQPSDRVNQITPPLVQPAVMRLMMRDAILRLRNNGFSILALALRVKYPELVSLSNMTVFALDDFSI FSGSYSYVSSVRFHIVPNQLLSFADLERLPVGCQLPTLETGQYLVVTTASTGSSTLSPPAPMRINYVRIKLPDVIRNLKIAVHGVYLPFPRIQPTAVASA HSFDQSHVDPASACAALSEDGSCAMVPVPPVRANLEMEDHHGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10019675 [exp]	0	1
					Lus10042011 [exp]	1.4	0.9540
AT3G19940			Major facilitator superfamily ...		Lus10028729 [exp]	3.7	0.8895
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	4.0	0.9133
					Lus10036557 [exp]	5.0	0.9122
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10004336 [exp]	7.6	0.9173
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	7.9	0.9157
AT1G49000			unknown protein		Lus10032453 [exp]	10.0	0.9040
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	12.4	0.9042
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10036556 [exp]	13.2	0.8609
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	15.0	0.9095

Compare expression of checked genes

Lus10019675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.