Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01920 262 / 6e-84 SET domain-containing protein (.1.2) AT1G14030 56 / 8e-09 Rubisco methyltransferase family protein (.1) AT1G24610 49 / 3e-06 Rubisco methyltransferase family protein (.1) AT2G18850 42 / 0.0005 SET domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016435 [exp] 361 / 7e-123 AT1G01920 680 / 0.0 SET domain-containing protein (.1.2) Lus10025463 [exp] 47 / 2e-05 AT2G18850 525 / 0.0 SET domain-containing protein (.1.2) Lus10034599 [exp] 46 / 2e-05 AT1G24610 607 / 0.0 Rubisco methyltransferase family protein (.1) Lus10006953 [exp] 46 / 2e-05 AT2G18850 548 / 0.0 SET domain-containing protein (.1.2) Lus10021783 [exp] 45 / 3e-05 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10036780 [exp] 45 / 6e-05 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077700 [exp] 272 / 9e-88 AT1G01920 729 / 0.0 SET domain-containing protein (.1.2) Potri.008G090500 [exp] 58 / 3e-09 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G134200 [exp] 52 / 3e-07 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019677 pacid=23139237 polypeptide=Lus10019677 locus=Lus10019677.g ID=Lus10019677.BGIv1.0 annot-version=v1.0 ATGAGAGTACTGGAAGATCCTCTCATTGGACCGGATTGTAGAGCCATGCTCGAAGGAGGAGTGGACTACAGGTTCTTGATGATCCTCTTCCTTCTCGTGG AGCGCTTGAGGGAGAATTCTTCTTGGAAACCGTACCTTGACATGCTTCCAACTACGTTTGGAAACCCGCTCTGGTTTAGTGGCAATGATCTGTTAGAGCT AAAGGGGACAGCACTGTACCGGGCATCCGAATTACAGAAAAAGAGTTTGATGTCACTTTTCGAAGACAAAGCGAAGGATCTGGTGAGGAAACTTCTTGTT CGTGATGGGAATACGAAAATGGAAGCCTCTTTCGACGATTTCCTGTGGGTGAATTCTGTGTTTTGGAGTCGTGCTCTGAACATTCCTTTCCCCCTTTGCA AGGAGGGCCTAGCTGATGATGGTCTGCCTTCCAGCTCAAGTCAAGATGAGACCGTCTGGGTAGAAGGTCTTGTTCCCGGGATTGATTTCTGCAACCATGA CTTGAGGGCAATGGCTACATGGGAGGTGGATGGGGCTGGCTCTAAGACTGGAACGCCTTGCTCAATGTATCTTCTTTCTGTGATTTATCGCTCTCTCGTG ATTGGAAAGCTGAACAAAGCTTATTCGACATTGGCAAGGAGATCTCCATCAGTTACGGAAGCAAAGGCAATGAAGATGACTGATTTGGAAGAAGGAACTG GAACAGAGGAAAAGGATTCTGAACTGCTGCTTGGAAATGCCAAGAATGCTGGAAATCATTGGTCAAGCATTGTGTATAGAAAGGGGCAAAAGGAGATGAC CAGATTGTTCCTCAGGGAAGCAAAACATGCACTCCACTTGTCGTTAACCGAAGACAACTGA
AA sequence Show only first row Show all	>Lus10019677 pacid=23139237 polypeptide=Lus10019677 locus=Lus10019677.g ID=Lus10019677.BGIv1.0 annot-version=v1.0 MRVLEDPLIGPDCRAMLEGGVDYRFLMILFLLVERLRENSSWKPYLDMLPTTFGNPLWFSGNDLLELKGTALYRASELQKKSLMSLFEDKAKDLVRKLLV RDGNTKMEASFDDFLWVNSVFWSRALNIPFPLCKEGLADDGLPSSSSQDETVWVEGLVPGIDFCNHDLRAMATWEVDGAGSKTGTPCSMYLLSVIYRSLV IGKLNKAYSTLARRSPSVTEAKAMKMTDLEEGTGTEEKDSELLLGNAKNAGNHWSSIVYRKGQKEMTRLFLREAKHALHLSLTEDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01920			SET domain-containing protein ...		Lus10019677 [exp]	0	1
AT5G44150			unknown protein		Lus10011074 [exp]	2.4	0.7256
					Lus10033844 [exp]	4.2	0.7852
AT5G47880		ERF1-1	eukaryotic release factor 1-1 ...		Lus10031479 [exp]	6.2	0.7889
AT3G18550	TCP	AtBRC1, ATTCP18...	BRANCHED 1, TCP family transcr...		Lus10021713 [exp]	8.7	0.7506
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002613 [exp]	9.2	0.7736
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10004408 [exp]	12.3	0.7170
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10020268 [exp]	15.0	0.7867
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10011729 [exp]	16.1	0.7080
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	26.8	0.7106
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10017112 [exp]	28.7	0.7251

Compare expression of checked genes

Lus10019677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.