Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10080 520 / 0 Eukaryotic aspartyl protease family protein (.1) AT4G35880 271 / 3e-84 Eukaryotic aspartyl protease family protein (.1) AT2G17760 255 / 2e-78 Eukaryotic aspartyl protease family protein (.1) AT3G51330 215 / 6e-63 Eukaryotic aspartyl protease family protein (.1) AT3G51360 211 / 5e-62 Eukaryotic aspartyl protease family protein (.1) AT3G51350 209 / 6e-61 Eukaryotic aspartyl protease family protein (.1) AT3G51340 200 / 2e-57 Eukaryotic aspartyl protease family protein (.1) AT3G02740 105 / 3e-24 Eukaryotic aspartyl protease family protein (.1) AT5G43100 105 / 6e-24 Eukaryotic aspartyl protease family protein (.1) AT1G05840 103 / 2e-23 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016434 [exp] 836 / 0 AT5G10080 515 / 1e-180 Eukaryotic aspartyl protease family protein (.1) Lus10041864 [exp] 296 / 3e-94 AT4G35880 646 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028410 [exp] 297 / 2e-93 AT4G35880 672 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028411 [exp] 257 / 8e-79 AT2G17760 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041865 [exp] 247 / 3e-75 AT2G17760 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 99 / 1e-21 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042982 [exp] 99 / 1e-21 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021485 [exp] 96 / 7e-21 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 96 / 8e-21 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079900 [exp] 636 / 0 AT5G10080 538 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G092100 [exp] 514 / 1e-178 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1) Potri.007G063800 [exp] 295 / 1e-93 AT4G35880 696 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G108700 [exp] 253 / 2e-77 AT2G17760 515 / 1e-179 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 107 / 1e-24 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 106 / 2e-24 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 105 / 6e-24 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 102 / 7e-23 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 100 / 2e-22 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 94 / 2e-20 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10019678 pacid=23139203 polypeptide=Lus10019678 locus=Lus10019678.g ID=Lus10019678.BGIv1.0 annot-version=v1.0 ATGGCGGCTCGATCTCCGCTCCCTCTCCTCCTCATCCTCCTCCTCGCCGTAATCGTCCATAAGGTGGTGGGAGGGATCACCTTGTCCACCAAGCTGATTC ACCGCTTCTCCGACGAGGTCAAGTCGCTCAAAGCTCGTCGGAATGTCACTGCCAGCTCCTACTGGCCGGAGAAGAGTAGCCCCGAGTACTACAGCTTGCT CCTTGACAGTGACCTCCAGAGGCAGAAGATGAAGCTTGGACCTAGCAACCAGCTCCTCTTCCCTGCTGAAGGAAGCAACACTGTCTCCCTCGGCAATGAC TTCGGATGGCTGCACTACACCATGATAGACCTGGGGACTCCTCATGTCTCCTTCCTCGTTGCAGTAGATACTGGGAGTGACTTGCTTTGGGTTCCCTGTG AATGCTTGCAATGTGCCCCATTATCAGCCAGTTACTATGGAAGTCTGGATCAAGATCTTAATGAATATAATCCATCTCAGTCAAGTAGTAGCAAACTCCT ATCGTGCAGCGACCAGTTATGCGAACTAGGTTCAAAATGCAAAAGCCCGAGTCAGCAGTGCCCATACTCTGTTGAGTACTATTCGGAAAATACATCCAGT TCTGGCTTGTTGGTTCAAGATGTTTTATATTTTGCATCAGATGATGTTGGTACAACAAATGTTTCTCTCAAGGCTCCAGTCCTCGTGGGATGTGGCAAGA AACAAAGTGGCGGTTACTTGGATGGAATCGCCCCTGATGGTCTCATGGGTTTGGGGCCAGGGAAAATCTCAGTTCCGAGCTTTCTTGCAAGAGCCGGGTT TGTTCAGGATTCCTTCTCCTTGTGCTTCGATGAAGAAGACTCTGGCAAAATTTATTTCGGCGACCAGGGTCCAGTTTCTCAGCACTCTACTCCATTCCTC ACTTCAAATGGCAACTACACGACCTATATTGTGGGAGTGGAGGCATGCTGCGTTGGTGGTTCTTGTCTTAAGCAGACAAGCTTTAAGGCACTAGTTGATA GTGGTACATCGTTTACTTTTCTTCCTCGGGCAGTTTTCCAGAAGACTGCAGATGAGTTTCATAGACGGGTAAATGCTCCAATAGCAAGCTTCGACGGGTA TCCTTGGAAGTACTGCTATAAGTCCAGTTCAGAGGAGTCACCAAAAATACCCTCCATGAAACTCGTGTTTGCAATGAACAACACCTTTATGATCCATAGT CCTGTTTTCAAGACCTACGGCGTTCAGGGTCTAACTGGATTTTGTTTAGCCGTTCAACCAGCTGATGGGGATATCGGAATTCTCGGACTGAACTTCATGA CCGGGTATAGAATAGTGTTCGACAGAGAAAATCTGAAGCTAGGCTGGTCGCGCTCGGAATGTCAAGACGAGATCATTTGGGTACCCGGAAACCCAACAGG AATACCATCATCATCATCAGCAAACCCGTTACTGCCAACAAACCAGGAACAGAGGATTCCCGGACAGCATGCCGTTTCGCCAGCTGTTGCAGGTAGAGCT CCGTTGCGACCTTCTGCCTCGGCGAAGCACCGAGCATCGTCCGGCCTGGTGTCGGTGGTGAAGTTGTTGCCGGCGCTGCTTGTGTTACTGCATTCTCCAT CTTTGACTTTGTGA
AA sequence Show only first row Show all	>Lus10019678 pacid=23139203 polypeptide=Lus10019678 locus=Lus10019678.g ID=Lus10019678.BGIv1.0 annot-version=v1.0 MAARSPLPLLLILLLAVIVHKVVGGITLSTKLIHRFSDEVKSLKARRNVTASSYWPEKSSPEYYSLLLDSDLQRQKMKLGPSNQLLFPAEGSNTVSLGND FGWLHYTMIDLGTPHVSFLVAVDTGSDLLWVPCECLQCAPLSASYYGSLDQDLNEYNPSQSSSSKLLSCSDQLCELGSKCKSPSQQCPYSVEYYSENTSS SGLLVQDVLYFASDDVGTTNVSLKAPVLVGCGKKQSGGYLDGIAPDGLMGLGPGKISVPSFLARAGFVQDSFSLCFDEEDSGKIYFGDQGPVSQHSTPFL TSNGNYTTYIVGVEACCVGGSCLKQTSFKALVDSGTSFTFLPRAVFQKTADEFHRRVNAPIASFDGYPWKYCYKSSSEESPKIPSMKLVFAMNNTFMIHS PVFKTYGVQGLTGFCLAVQPADGDIGILGLNFMTGYRIVFDRENLKLGWSRSECQDEIIWVPGNPTGIPSSSSANPLLPTNQEQRIPGQHAVSPAVAGRA PLRPSASAKHRASSGLVSVVKLLPALLVLLHSPSLTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10080			Eukaryotic aspartyl protease f...		Lus10019678 [exp]	0	1
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10002468 [exp]	1.0	0.8087
AT5G10080			Eukaryotic aspartyl protease f...		Lus10016434 [exp]	3.2	0.7626
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10020435 [exp]	6.6	0.7741
AT3G04470			Ankyrin repeat family protein ...		Lus10029612 [exp]	7.9	0.7579
AT4G03630			RNI-like superfamily protein (...		Lus10008704 [exp]	8.3	0.7068
AT2G21190			ER lumen protein retaining rec...		Lus10042389 [exp]	9.5	0.7175
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	9.5	0.7470
AT2G24370			Protein kinase protein with ad...		Lus10009896 [exp]	10.7	0.6936
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	14.5	0.7615
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000951 [exp]	15.1	0.7644

Compare expression of checked genes

Lus10019678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.