Plant FIBer expression Database

Lus10019680 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39680 195 / 6e-54 SAP domain-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016433
[exp]
906 / 0 AT4G39680 349 / 4e-111 SAP domain-containing protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G080500
[exp]
357 / 5e-114 AT4G39680 377 / 5e-122 SAP domain-containing protein (.1.2)
Potri.007G086900
[exp]
318 / 1e-98 AT4G39680 365 / 1e-116 SAP domain-containing protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0306 HeH PF02037 SAP SAP domain
Representative CDS sequence
>Lus10019680 pacid=23139229 polypeptide=Lus10019680 locus=Lus10019680.g ID=Lus10019680.BGIv1.0 annot-version=v1.0
ATGTCATCTCAATACCCTATCCTTGATGGCAAACCTCTAGAGCAGTGGAAGGTCGTAGAGCTGAGAGAAGAGCTCAAGAGTAGGAAGTTGGCGACCAAGG
GTTTGAAGGATGATCTGCTCAAGCGTTTGGCAGAAGCTCTACGCGTTGAGAGGGAAAATGCTGTGATAGAGGAGGCTGATCAGGATCAAAGTACTGTTAA
GGAAGATGCAGAAGCACCTGTTGTTTCAGAGACAGTTAATCATGGTGAAATGGTTGATGGTGGTTCCAATGATAAGAATGGTGATGGTGGGCAAGGTCAA
CTTGACAACAATGATAACTCGGAAACAACGGGGCAAGAGAAACCTCAAGATGACATATTAATAGGTGGTGCTAAGTCTCCGACTGCAGATGAGAATGTGG
CTAAAGGGGTTGTCATTGAAATCGAGACAGATGAGAATGTGGCTCCTAGTTTAGTTGATAGTGGAAAAAATGTTCAAGATTCTGGAACACAGGAATTAGA
TGACACACGAAAGATTCAGGTGGGAGATGTGGTAGATCTGAAACCACAGGTGGAGAGTGAGGATCTGAAGTCTCAGCTGGAGGGTGAGGATCTGAAGTCT
CACTTGGAGACTGACGATCTGAACCCCGAGCTGGAGACTGACGATCCGAAGCCCAAGCTTGAGAGTGACAATGGAAAACCACGACTAGATGATGAGGATG
TGAAGTTTGAGGTTAAAATTGAGGAGTTGAAGCCTCAGCCCGACAATCTCATGCATGACATATCTGCTCCAAATGCCCAGGTATCTGAGGTTAGCCCTAG
TTTAGGGTTTCAAGCAAAATCTGATTCAATTTATACTGATTCTGTCTCAATTAATGAAAAAAATGAGCTAAAGGATAACATAATTGCTGATAATGTCAAA
TTAGAACTAGATGTTGTTAAACCAGAGATGGTGGAAGTGTCGTCAAGTAATGTGGTCCCAGTTGGTGGTGAATCACATCCTATGGATGTCGAAGAGCCAC
ATGAGAAGAAGTCGTCTGTTGAGGAGGTTGGTGTGGTTTATTCAGAAAAGTTGAATCTAGATAGAAGTTCGGGTGATGACTCGATGGATGAAGATATCTC
GGAGGTTAAACAAATTGATTCGAAAGATAATTCTGAGATGGTGGGAAAGAACAATGAAACAAACAAAGTTCTTGCTGACAAAGATGTTGATATTCTCGAG
CTTGAAGATAATAAGCCTTCAGTGGATCAGACTAAAAATCTTACTGAGAATAAGAACCGCCAAGATGTGGCTGTTGAGAAAAGGAAGCTTAACGACAAGG
AGGCTGTGGGCGCCGAACCTTTGAAGAGGCAACGAAGGTGGAATTCTCAGAACAACAAAGCTCCGGAGCTGCCAGCTTCTACTCAGGCTCAAGTAACCAC
ACCTAAGGATACTTCTCAGCCTCCTAGTCGCAACTTTTCTCGATCCAACTCCACAGCTAGTGATGATACACCAAAGGAGCGTGTTGTTCCACCGCCACAG
AAACATCCTGTGTTTCAATACTCTTCCATGGAAGAAGCCACAAATACTCGGAACGCAGTATACAATCTTAAATGGCCTGCCAATGGTGGGCATAATCTGG
TTGCCGAATTTGTCGAACCTCAGGAGGTTAAGGCAAAGCTCGAGGCACCAGCTCCAACTGCACTGATCACGCCAAAGACTGCTCCTTTTCCTACTGCTGC
TATTCCTTCTCCGAGGCTGCAGCCTACTAGACAGCAACTCCCACCTCCGCCGCCACTTCCACCGCCGCCACCTCTGTCGAACCCACCTTCTGTCATGGAA
CGGCTCGCTCCGCCACCCCCACCACCTCCAGGTGCACTCGAGCCTCCGATCATGACCTTGGACGACCTGTTCCGGAAAACCAAGGCAACCCCTCGGATTT
ACTACCTCCCGTTATCGGAGGAAGAAGTTGCTGCCAAGAGGCGCGCCCAACTGGGTAAGCAAGTCAAGCAGTAG
AA sequence
>Lus10019680 pacid=23139229 polypeptide=Lus10019680 locus=Lus10019680.g ID=Lus10019680.BGIv1.0 annot-version=v1.0
MSSQYPILDGKPLEQWKVVELREELKSRKLATKGLKDDLLKRLAEALRVERENAVIEEADQDQSTVKEDAEAPVVSETVNHGEMVDGGSNDKNGDGGQGQ
LDNNDNSETTGQEKPQDDILIGGAKSPTADENVAKGVVIEIETDENVAPSLVDSGKNVQDSGTQELDDTRKIQVGDVVDLKPQVESEDLKSQLEGEDLKS
HLETDDLNPELETDDPKPKLESDNGKPRLDDEDVKFEVKIEELKPQPDNLMHDISAPNAQVSEVSPSLGFQAKSDSIYTDSVSINEKNELKDNIIADNVK
LELDVVKPEMVEVSSSNVVPVGGESHPMDVEEPHEKKSSVEEVGVVYSEKLNLDRSSGDDSMDEDISEVKQIDSKDNSEMVGKNNETNKVLADKDVDILE
LEDNKPSVDQTKNLTENKNRQDVAVEKRKLNDKEAVGAEPLKRQRRWNSQNNKAPELPASTQAQVTTPKDTSQPPSRNFSRSNSTASDDTPKERVVPPPQ
KHPVFQYSSMEEATNTRNAVYNLKWPANGGHNLVAEFVEPQEVKAKLEAPAPTALITPKTAPFPTAAIPSPRLQPTRQQLPPPPPLPPPPPLSNPPSVME
RLAPPPPPPPGALEPPIMTLDDLFRKTKATPRIYYLPLSEEEVAAKRRAQLGKQVKQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G39680 SAP domain-containing protein ... Lus10019680
[exp]
0 1
AT3G20630 PER1, ATUBP14, ... TITAN6, phosphate deficiency r... Lus10037870
[exp]
2.8 0.8767
AT3G08020 PHD finger family protein (.1) Lus10019715
[exp]
3.9 0.8499
AT1G04080 PRP39 Tetratricopeptide repeat (TPR)... Lus10024952
[exp]
4.2 0.8683
AT1G29940 NRPA2 nuclear RNA polymerase A2 (.1) Lus10026157
[exp]
6.9 0.9005
AT3G52140 tetratricopeptide repeat (TPR)... Lus10015708
[exp]
10.7 0.8775
AT2G17510 EMB2763 EMBRYO DEFECTIVE 2763, ribonuc... Lus10029500
[exp]
11.0 0.8875
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Lus10038373
[exp]
12.4 0.8396
AT1G55930 CBS domain-containing protein ... Lus10004777
[exp]
13.4 0.8752
AT1G51350 ARM repeat superfamily protein... Lus10002562
[exp]
17.5 0.8534
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Lus10036234
[exp]
18.5 0.8328

Lus10019680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.